Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   DF184_RS05475 Genome accession   NZ_CP029398
Coordinates   1073486..1074712 (-) Length   408 a.a.
NCBI ID   WP_029171791.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068486..1079712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS05445 (DF184_05445) - 1068606..1069913 (-) 1308 WP_109371440.1 excalibur calcium-binding domain-containing protein -
  DF184_RS05450 (DF184_05450) - 1070048..1070230 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  DF184_RS05455 (DF184_05455) lepA 1070280..1072112 (-) 1833 WP_024383525.1 translation elongation factor 4 -
  DF184_RS05465 (DF184_05465) ndk 1072409..1072822 (-) 414 WP_002934976.1 nucleoside-diphosphate kinase -
  DF184_RS05470 (DF184_05470) yihA 1072845..1073432 (-) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DF184_RS05475 (DF184_05475) clpX 1073486..1074712 (-) 1227 WP_029171791.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  DF184_RS11020 (DF184_05480) - 1074734..1074907 (-) 174 WP_024411302.1 hypothetical protein -
  DF184_RS05485 (DF184_05485) - 1074910..1075422 (-) 513 WP_105095071.1 dihydrofolate reductase -
  DF184_RS05490 (DF184_05490) - 1075597..1076436 (-) 840 WP_109371444.1 thymidylate synthase -
  DF184_RS05495 (DF184_05495) - 1076489..1076791 (-) 303 WP_109371446.1 hypothetical protein -
  DF184_RS05500 (DF184_05500) - 1076803..1077081 (-) 279 WP_002934968.1 hypothetical protein -
  DF184_RS05505 (DF184_05505) - 1077206..1078165 (-) 960 WP_024390350.1 ROK family glucokinase -
  DF184_RS05510 (DF184_05510) - 1078257..1078592 (-) 336 WP_024406321.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45309.83 Da        Isoelectric Point: 4.5987

>NTDB_id=292274 DF184_RS05475 WP_029171791.1 1073486..1074712(-) (clpX) [Streptococcus suis strain HN105]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=292274 DF184_RS05475 WP_029171791.1 1073486..1074712(-) (clpX) [Streptococcus suis strain HN105]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAACAATGTTTTCATTTGTAATGAATGTGTAGAATTGGCCCAAGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAGGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTTATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCACAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAAGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAGATGATTCATGTCGATACCAAAAAC
ATCCTCTTCATCGTAGGCGGTGCCTTTGATGGTATTGAGGAGATTGTCAAACAGCGACTTGGTGAGAAAATCATCGGTTT
TGGTCAAAACAATCGTGCCATTGATGAAAAAGAATCCTACATGCAACATATCATTGCAGATGATATTCAAAAATTCGGTA
TTATTCCAGAGTTGATTGGTCGCTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGTATTTTG
ACGGAACCAAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGCGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.374

100

0.836
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574

Multiple sequence alignment