Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECIAI39_RS14065 Genome accession   NC_011750
Coordinates   2912015..2912752 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli IAI39     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2907015..2917752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECIAI39_RS14050 (ECIAI39_2797) clpC 2907469..2910042 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECIAI39_RS14055 (ECIAI39_2798) yfiH 2910172..2910903 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  ECIAI39_RS14060 (ECIAI39_2799) rluD 2910900..2911880 (-) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECIAI39_RS14065 (ECIAI39_2800) comL 2912015..2912752 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECIAI39_RS14070 (ECIAI39_2801) - 2912802..2914148 (-) 1347 WP_000483766.1 IS4-like element IS4 family transposase -
  ECIAI39_RS14075 (ECIAI39_2802) raiA 2914461..2914802 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECIAI39_RS14080 (ECIAI39_4941) pheL 2914906..2914953 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECIAI39_RS14085 (ECIAI39_2803) pheA 2915052..2916212 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECIAI39_RS14090 (ECIAI39_2804) tyrA 2916255..2917376 (-) 1122 WP_000225236.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=29225 ECIAI39_RS14065 WP_000197686.1 2912015..2912752(+) (comL) [Escherichia coli IAI39]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=29225 ECIAI39_RS14065 WP_000197686.1 2912015..2912752(+) (comL) [Escherichia coli IAI39]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376