Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   DJ533_RS11485 Genome accession   NZ_CP029397
Coordinates   1905404..1905787 (-) Length   127 a.a.
NCBI ID   WP_065993067.1    Uniprot ID   -
Organism   Acinetobacter defluvii strain WCHA30     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1900404..1910787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS11455 (DJ533_11470) tadA 1900551..1901072 (-) 522 WP_065992954.1 tRNA adenosine(34) deaminase TadA -
  DJ533_RS11460 (DJ533_11475) - 1901082..1902206 (-) 1125 WP_065992952.1 enoyl-CoA hydratase/isomerase family protein -
  DJ533_RS11465 (DJ533_11480) ung 1902203..1902916 (-) 714 WP_065992950.1 uracil-DNA glycosylase -
  DJ533_RS11470 (DJ533_11485) - 1902988..1903584 (-) 597 WP_065992948.1 6-carboxytetrahydropterin synthase -
  DJ533_RS11475 (DJ533_11490) gspK 1903785..1904732 (-) 948 WP_065992946.1 type II secretion system minor pseudopilin GspK -
  DJ533_RS11480 (DJ533_11495) xcpW 1904754..1905386 (-) 633 WP_065992944.1 type II secretion system minor pseudopilin GspJ Machinery gene
  DJ533_RS11485 (DJ533_11500) xcpV 1905404..1905787 (-) 384 WP_065993067.1 type II secretion system minor pseudopilin GspI Machinery gene
  DJ533_RS11490 (DJ533_11505) - 1905951..1906517 (-) 567 WP_065992942.1 type II secretion system protein -
  DJ533_RS11495 (DJ533_11510) - 1906525..1907139 (-) 615 WP_065992940.1 TetR/AcrR family transcriptional regulator -
  DJ533_RS11500 (DJ533_11515) - 1907188..1907961 (-) 774 WP_065992938.1 TatD family hydrolase -
  DJ533_RS11505 (DJ533_11520) - 1907992..1908333 (-) 342 WP_065992935.1 PilZ domain-containing protein -
  DJ533_RS11510 (DJ533_11525) - 1908349..1909329 (-) 981 WP_065993065.1 DNA polymerase III subunit delta' -
  DJ533_RS11515 (DJ533_11530) kdsB 1909348..1910109 (-) 762 WP_065992931.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14097.16 Da        Isoelectric Point: 5.0506

>NTDB_id=292226 DJ533_RS11485 WP_065993067.1 1905404..1905787(-) (xcpV) [Acinetobacter defluvii strain WCHA30]
MPRSGFTLIEVVVALAIFAVAAMALTKVAMQYTQSTANSILRTKAQFIAQNQVALMEINQEQLTGTQSEQISSQGEMWQV
DKKAENTISPDIKKIDIQISLYNPDTNKVEAGITNVVFFNYPQKNVQ

Nucleotide


Download         Length: 384 bp        

>NTDB_id=292226 DJ533_RS11485 WP_065993067.1 1905404..1905787(-) (xcpV) [Acinetobacter defluvii strain WCHA30]
ATTCCTCGCTCAGGATTTACTTTAATCGAAGTGGTCGTGGCACTGGCAATCTTTGCTGTAGCTGCGATGGCACTGACCAA
AGTTGCAATGCAATATACTCAGTCTACTGCAAACTCCATTTTAAGAACGAAAGCGCAATTTATAGCGCAAAATCAAGTAG
CATTGATGGAAATTAATCAAGAGCAACTGACAGGAACACAGTCTGAGCAAATCTCCTCGCAAGGTGAAATGTGGCAAGTC
GATAAAAAAGCTGAAAATACGATTAGTCCAGATATTAAAAAAATTGATATACAAATAAGTTTATATAATCCTGACACTAA
TAAAGTGGAAGCAGGCATTACCAATGTTGTGTTTTTTAATTATCCACAAAAAAATGTACAGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

71.774

97.638

0.701

Multiple sequence alignment