Detailed information NTG0292225

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: DJ533_RS11480
• Genome accession: NZ_CP029397
• Coordinates: 1904754..1905386 (-)
• Length: 210 a.a.
• NCBI ID: WP_065992944.1
• Uniprot ID: A0A2S2FDW3
• Organism: Acinetobacter defluvii strain WCHA30
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1899754..1910386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DJ533_RS11450 (DJ533_11465)	-	1900061..1900495 (-)	435	WP_065992956.1	SRPBCC family protein	-
DJ533_RS11455 (DJ533_11470)	tadA	1900551..1901072 (-)	522	WP_065992954.1	tRNA adenosine(34) deaminase TadA	-
DJ533_RS11460 (DJ533_11475)	-	1901082..1902206 (-)	1125	WP_065992952.1	enoyl-CoA hydratase/isomerase family protein	-
DJ533_RS11465 (DJ533_11480)	ung	1902203..1902916 (-)	714	WP_065992950.1	uracil-DNA glycosylase	-
DJ533_RS11470 (DJ533_11485)	-	1902988..1903584 (-)	597	WP_065992948.1	6-carboxytetrahydropterin synthase	-
DJ533_RS11475 (DJ533_11490)	gspK	1903785..1904732 (-)	948	WP_065992946.1	type II secretion system minor pseudopilin GspK	-
DJ533_RS11480 (DJ533_11495)	xcpW	1904754..1905386 (-)	633	WP_065992944.1	type II secretion system minor pseudopilin GspJ	Machinery gene
DJ533_RS11485 (DJ533_11500)	xcpV	1905404..1905787 (-)	384	WP_065993067.1	type II secretion system minor pseudopilin GspI	Machinery gene
DJ533_RS11490 (DJ533_11505)	-	1905951..1906517 (-)	567	WP_065992942.1	type II secretion system protein	-
DJ533_RS11495 (DJ533_11510)	-	1906525..1907139 (-)	615	WP_065992940.1	TetR/AcrR family transcriptional regulator	-
DJ533_RS11500 (DJ533_11515)	-	1907188..1907961 (-)	774	WP_065992938.1	TatD family hydrolase	-
DJ533_RS11505 (DJ533_11520)	-	1907992..1908333 (-)	342	WP_065992935.1	PilZ domain-containing protein	-
DJ533_RS11510 (DJ533_11525)	-	1908349..1909329 (-)	981	WP_065993065.1	DNA polymerase III subunit delta'	-
DJ533_RS11515 (DJ533_11530)	kdsB	1909348..1910109 (-)	762	WP_065992931.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 210 a.a.
• Molecular weight: 24099.55 Da
• Isoelectric Point: 6.4886

>NTDB_id=292225 DJ533_RS11480 WP_065992944.1 1904754..1905386(-) (xcpW) [Acinetobacter defluvii strain WCHA30]
MSNKTKIKGFTLIELMVAIAIFAVLAALGWKIFDYLSKVKDRNAMHEQNLDQLQQAYQQIQRDTLQTIPVTGSLGQQILP
ALQLENQKMSFSKTGMTDPLKQGIASFERIEYVYNVQDKKLYRLKYSNLNLSAAAQPLSSVLLSDVDQYQISVLNPNEGD
RWPDENAFNERQLPRGIKIKVMIHDVEYEWIFSLLNTEFLREQNNGNNSP

Nucleotide

• Length: 633 bp

>NTDB_id=292225 DJ533_RS11480 WP_065992944.1 1904754..1905386(-) (xcpW) [Acinetobacter defluvii strain WCHA30]
ATGTCGAATAAGACTAAAATAAAAGGATTTACACTGATTGAACTCATGGTTGCTATTGCAATCTTTGCTGTTTTGGCGGC
ATTGGGGTGGAAAATTTTTGATTATTTGAGCAAAGTCAAAGATCGTAATGCAATGCATGAACAAAATCTTGATCAATTAC
AACAAGCCTATCAGCAAATTCAACGTGATACTTTACAGACGATTCCTGTGACTGGCAGTCTAGGGCAACAGATTTTACCT
GCGCTACAACTTGAAAATCAAAAAATGAGTTTTAGTAAAACAGGCATGACTGATCCTTTGAAGCAAGGTATTGCCAGTTT
TGAGCGCATTGAATATGTTTATAATGTACAGGATAAAAAGCTATATCGTTTAAAATACAGTAACTTAAATTTATCTGCTG
CGGCACAGCCTTTATCTAGTGTATTGCTGAGTGATGTGGATCAATACCAAATCAGTGTGCTTAATCCAAATGAGGGGGAT
CGTTGGCCGGATGAAAATGCCTTTAATGAGCGTCAGTTACCACGTGGCATCAAGATCAAAGTTATGATTCATGATGTGGA
GTATGAATGGATTTTTAGTTTATTAAATACTGAATTTTTGCGTGAGCAAAATAATGGTAATAATTCCCCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (53-191)

• Prokaryotic N-terminal methylation motif (N_methyl) (6-28)

3D structure

• AlphaFold DB: A0A2S2FDW3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	62.051	92.857	0.576