Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DJ533_RS04830 Genome accession   NZ_CP029397
Coordinates   525307..525990 (-) Length   227 a.a.
NCBI ID   WP_065994076.1    Uniprot ID   A0A2S2FAH3
Organism   Acinetobacter defluvii strain WCHA30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520307..530990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS04795 (DJ533_04805) - 520793..521470 (+) 678 WP_065994070.1 outer membrane lipid asymmetry maintenance protein MlaD -
  DJ533_RS04800 (DJ533_04810) - 521492..522124 (+) 633 WP_065994071.1 phospholipid-binding protein MlaC -
  DJ533_RS04805 (DJ533_04815) - 522140..522427 (+) 288 WP_065994072.1 toluene tolerance protein -
  DJ533_RS04810 (DJ533_04820) - 522509..522925 (+) 417 WP_065994073.1 hypothetical protein -
  DJ533_RS04815 (DJ533_04825) - 523025..524038 (-) 1014 WP_065994074.1 magnesium and cobalt transport protein CorA -
  DJ533_RS04820 (DJ533_04830) - 524197..524814 (+) 618 WP_065994075.1 TIGR00730 family Rossman fold protein -
  DJ533_RS04825 (DJ533_04835) - 524918..525310 (+) 393 WP_065994129.1 NUDIX domain-containing protein -
  DJ533_RS04830 (DJ533_04840) comF 525307..525990 (-) 684 WP_065994076.1 ComF family protein Machinery gene
  DJ533_RS04835 (DJ533_04845) - 526030..526503 (-) 474 WP_065994077.1 hypothetical protein -
  DJ533_RS04840 (DJ533_04850) recG 526523..528568 (-) 2046 WP_065994078.1 ATP-dependent DNA helicase RecG -
  DJ533_RS04845 (DJ533_04855) - 528628..529398 (+) 771 WP_065994079.1 NAD(P)H-binding protein -
  DJ533_RS04850 (DJ533_04860) - 529674..530183 (+) 510 WP_065994080.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26408.51 Da        Isoelectric Point: 8.7833

>NTDB_id=292219 DJ533_RS04830 WP_065994076.1 525307..525990(-) (comF) [Acinetobacter defluvii strain WCHA30]
MLSFINQLFHKGVQSISPCLLCGIDRQQQHSLCSNCWEQLPWYRQHIQRHEHNILCAHHYDFPIDRIIQTYKYEQQLQYQ
NLLAHSLLNLRTPKVQAIVPMPISTERLKERGYNQMLIIANIMAKELKVPVWQPVIRAAQHSQKGLSRLERLENIEDQFQ
IIQTEKRKHKKVLIIDDVVTTGSSIHALSQALEKLGCQQIYTACIAAGGIKQRSQLEESATNFKEYN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=292219 DJ533_RS04830 WP_065994076.1 525307..525990(-) (comF) [Acinetobacter defluvii strain WCHA30]
ATGCTCTCATTCATTAACCAACTGTTCCACAAAGGCGTACAAAGCATCTCCCCTTGCCTACTCTGTGGCATTGACCGCCA
ACAACAGCATTCGCTTTGTAGCAACTGTTGGGAACAATTGCCGTGGTACAGACAACATATCCAGCGTCATGAACACAACA
TACTTTGCGCACATCACTATGACTTTCCGATTGATCGAATTATTCAAACTTACAAATACGAACAACAACTACAATATCAA
AACCTTTTAGCGCATAGTTTACTGAATTTAAGAACTCCCAAAGTTCAAGCCATTGTGCCGATGCCCATTTCCACAGAACG
ACTAAAAGAACGTGGTTATAACCAAATGTTGATCATTGCCAATATCATGGCAAAAGAACTGAAAGTACCCGTTTGGCAAC
CCGTGATCCGAGCTGCACAACATTCACAAAAAGGCTTAAGCCGACTTGAACGATTAGAAAATATTGAAGATCAATTTCAA
ATCATTCAAACAGAAAAACGAAAACACAAAAAAGTACTGATTATTGATGATGTGGTCACAACAGGAAGTTCGATTCATGC
CCTGAGCCAAGCTTTAGAAAAACTCGGCTGTCAGCAGATTTATACTGCATGTATTGCAGCAGGAGGAATTAAACAACGTT
CTCAGCTTGAAGAATCTGCGACCAATTTCAAAGAGTATAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2FAH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.287

92.07

0.555
  comF Acinetobacter baumannii D1279779

59.809

92.07

0.551

Multiple sequence alignment