Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DJ533_RS04160 Genome accession   NZ_CP029397
Coordinates   384773..386359 (-) Length   528 a.a.
NCBI ID   WP_065995172.1    Uniprot ID   A0A2S2FHQ3
Organism   Acinetobacter defluvii strain WCHA30     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 379773..391359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS04145 (DJ533_04155) gpmI 380566..382113 (+) 1548 WP_065995133.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  DJ533_RS04150 (DJ533_04160) - 382151..383323 (+) 1173 WP_065995134.1 S41 family peptidase -
  DJ533_RS04155 (DJ533_04165) pilR 383346..384755 (-) 1410 WP_065995135.1 sigma-54 dependent transcriptional regulator Regulator
  DJ533_RS04160 (DJ533_04170) pilS 384773..386359 (-) 1587 WP_065995172.1 PAS domain-containing sensor histidine kinase Regulator
  DJ533_RS04165 (DJ533_04175) - 386372..387007 (-) 636 WP_065995136.1 response regulator -
  DJ533_RS04170 (DJ533_04180) - 387239..388303 (+) 1065 WP_065995137.1 serine hydrolase -
  DJ533_RS04175 (DJ533_04185) - 388322..389149 (-) 828 WP_065995138.1 hypothetical protein -
  DJ533_RS04180 (DJ533_04190) thrC 389279..390418 (-) 1140 WP_065995139.1 threonine synthase -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 59910.59 Da        Isoelectric Point: 6.5618

>NTDB_id=292215 DJ533_RS04160 WP_065995172.1 384773..386359(-) (pilS) [Acinetobacter defluvii strain WCHA30]
MNTTWPTTATTSLQQTIYRLGTLYSVYRLTLAVSLVLIFVLTAEHNTLNYPHSSLYFDGLVTFIVVSLAQLLLLKFFTKF
ISEQLFAIFLVDILFLSTLTFALGGPSLSISLLFVIMVFSANFLLKKNEALIVTLVSVIAVIYQQFVGSFFDASNLNNIS
NSALLAFLFFIVYGIGQISIQRFRVLETINSLQSLELLQLQNINRYILEQIELGYLVLDENYRIVVSNPAACSLIGIAPL
YAYAHEQYSLIKFQKELYDLLQNKSLEEGQRFEFKSSQSHYTVDIRVQKLIVPHQALTLLTLEDSQKINQKVQQLKLASL
GQLSASIAHEIRNPLAAIAQANELSLDAEPEQRLMLNQMIDKQSHRINHIIQQTLDMAKNKKTCMSDIHLDVFFKDLFNN
DLNDVKNQIALSLPKPFVIRFDDSQLRQVLINLIRNALHHNAPDADFIQILVHAEAQHLYIDVIDFGEGIARQNLAQLFQ
PFFTTEINGTGLGLYLSQSICEANQAKLIYIEQKQKGACFRIECLLKT

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=292215 DJ533_RS04160 WP_065995172.1 384773..386359(-) (pilS) [Acinetobacter defluvii strain WCHA30]
ATGAATACAACGTGGCCTACGACAGCAACAACTTCCTTACAACAAACGATTTATCGTCTAGGCACATTGTATTCCGTTTA
TCGACTTACTTTAGCCGTATCCTTAGTTCTTATTTTTGTGCTAACTGCTGAGCATAATACTCTTAATTATCCCCACAGTT
CTTTATATTTTGATGGTTTAGTCACTTTTATTGTTGTCAGTCTTGCTCAGCTATTACTTCTTAAATTTTTTACTAAATTT
ATTTCTGAACAACTCTTTGCTATTTTTTTAGTTGATATTTTATTTTTAAGTACCCTGACTTTTGCTTTGGGTGGACCAAG
TCTATCCATCAGTCTACTGTTTGTAATCATGGTTTTTTCAGCCAATTTTTTACTCAAAAAAAATGAAGCTTTAATTGTTA
CTTTAGTTTCTGTTATTGCAGTTATCTATCAGCAATTTGTAGGGAGCTTTTTTGACGCTTCTAATTTAAATAATATTAGT
AATAGTGCCTTACTGGCTTTTTTATTTTTTATTGTTTATGGGATTGGTCAAATTTCCATTCAACGCTTTAGAGTGCTTGA
AACTATTAATTCCTTACAATCTCTAGAATTACTACAATTACAAAATATTAACCGTTATATTTTAGAGCAAATTGAGCTTG
GCTATTTGGTTTTAGATGAAAATTATCGAATTGTGGTGTCTAATCCTGCAGCTTGCTCTTTGATCGGTATTGCCCCCCTC
TATGCCTATGCACACGAACAGTATTCTTTAATTAAATTTCAAAAAGAGCTATATGACCTTTTGCAGAATAAATCCTTAGA
AGAAGGACAACGCTTTGAGTTTAAATCGAGTCAAAGCCATTATACTGTAGATATCCGAGTCCAAAAGCTGATCGTGCCGC
ATCAAGCTTTGACTTTACTCACACTAGAAGACTCACAAAAAATTAATCAAAAAGTACAGCAGTTAAAACTGGCGTCTTTA
GGACAACTTTCTGCCAGTATTGCGCATGAAATTCGTAATCCTTTGGCAGCAATCGCTCAAGCCAATGAACTTAGCTTAGA
TGCTGAGCCGGAACAAAGACTCATGCTCAATCAAATGATTGATAAACAAAGTCATCGAATCAATCACATCATTCAACAAA
CCTTAGACATGGCAAAAAATAAAAAAACCTGTATGTCAGATATTCATTTGGATGTTTTTTTTAAAGATTTATTTAACAAT
GATTTAAATGATGTAAAAAATCAAATTGCCTTAAGCCTCCCTAAGCCTTTTGTGATTCGATTTGATGACTCACAATTAAG
ACAAGTGTTAATTAATCTCATACGAAATGCACTCCACCACAATGCACCTGATGCTGATTTTATCCAAATTCTGGTGCATG
CAGAGGCTCAACATCTGTATATTGATGTGATAGACTTCGGTGAAGGTATTGCGCGACAAAATCTTGCACAACTCTTCCAA
CCCTTTTTCACTACGGAAATTAATGGAACTGGATTGGGTTTATATTTATCACAAAGTATTTGTGAAGCAAATCAAGCAAA
ATTGATTTATATAGAGCAAAAACAAAAAGGGGCATGCTTCAGAATTGAGTGCCTATTGAAAACTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(422-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(319-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2FHQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.282

97.538

0.559

Multiple sequence alignment