Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DIW83_RS18160 Genome accession   NZ_CP029351
Coordinates   3743784..3745205 (+) Length   473 a.a.
NCBI ID   WP_016803679.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3738784..3750205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS18140 (DIW83_18140) thrC 3739040..3740179 (+) 1140 WP_002048893.1 threonine synthase -
  DIW83_RS18145 (DIW83_18145) pbpG 3740287..3741333 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  DIW83_RS18150 (DIW83_18150) - 3741545..3742180 (+) 636 WP_016803680.1 response regulator -
  DIW83_RS18155 (DIW83_18155) - 3742191..3743759 (+) 1569 Protein_3519 sensor histidine kinase -
  DIW83_RS18160 (DIW83_18160) pilR 3743784..3745205 (+) 1422 WP_016803679.1 sigma-54-dependent transcriptional regulator Regulator
  DIW83_RS18165 (DIW83_18165) - 3745209..3746393 (-) 1185 WP_004883636.1 S41 family peptidase -
  DIW83_RS18170 (DIW83_18170) gpmI 3746409..3747956 (-) 1548 WP_016803678.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  DIW83_RS18175 (DIW83_18175) lptG 3748082..3749152 (-) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53205.43 Da        Isoelectric Point: 6.6690

>NTDB_id=291917 DIW83_RS18160 WP_016803679.1 3743784..3745205(+) (pilR) [Acinetobacter nosocomialis strain NCTC 8102]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQNYTNTLI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEGAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIATVSQS
FQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=291917 DIW83_RS18160 WP_016803679.1 3743784..3745205(+) (pilR) [Acinetobacter nosocomialis strain NCTC 8102]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGAGTTAGTCAAACATGTCTCTCAAAATTATACGAACACACTCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGGGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAATACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCTCGTTCT
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGTAGCTTTACAGGGGCAACGCAAGACAAACAAGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTTAGTATGCAGGTTAAATTACTACGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGTGTGATTAGTGCGAGTCATCAAGACTTAGATTTATTGGTTCGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACCGAGGGTGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCACATTTGCACCCTGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGCAACGGTATCTCAAAGC
TTTCAGAATCCCGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAGCGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.292

100

0.943
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488

Multiple sequence alignment