Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | DIW83_RS10340 | Genome accession | NZ_CP029351 |
| Coordinates | 2115577..2115957 (-) | Length | 126 a.a. |
| NCBI ID | WP_016804844.1 | Uniprot ID | - |
| Organism | Acinetobacter nosocomialis strain NCTC 8102 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2110577..2120957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DIW83_RS10310 (DIW83_10310) | tadA | 2110582..2111085 (-) | 504 | WP_031944625.1 | tRNA adenosine(34) deaminase TadA | - |
| DIW83_RS10315 (DIW83_10315) | - | 2111092..2112216 (-) | 1125 | WP_006580787.1 | enoyl-CoA hydratase/isomerase family protein | - |
| DIW83_RS10320 (DIW83_10320) | ung | 2112213..2112926 (-) | 714 | WP_002049829.1 | uracil-DNA glycosylase | - |
| DIW83_RS10325 (DIW83_10325) | - | 2112977..2113573 (-) | 597 | WP_016804842.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| DIW83_RS10330 (DIW83_10330) | gspK | 2113803..2114762 (-) | 960 | WP_017398262.1 | type II secretion system minor pseudopilin GspK | - |
| DIW83_RS10335 (DIW83_10335) | xcpW | 2114762..2115577 (-) | 816 | WP_016804843.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| DIW83_RS10340 (DIW83_10340) | xcpV | 2115577..2115957 (-) | 381 | WP_016804844.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| DIW83_RS10345 (DIW83_10345) | - | 2115947..2116498 (-) | 552 | WP_016804845.1 | type II secretion system protein | - |
| DIW83_RS10350 (DIW83_10350) | - | 2116508..2117116 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| DIW83_RS10355 (DIW83_10355) | - | 2117154..2117927 (-) | 774 | WP_004709116.1 | TatD family hydrolase | - |
| DIW83_RS10360 (DIW83_10360) | - | 2117945..2118286 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| DIW83_RS10365 (DIW83_10365) | - | 2118298..2119278 (-) | 981 | WP_016804846.1 | DNA polymerase III subunit delta' | - |
| DIW83_RS10370 (DIW83_10370) | kdsB | 2119290..2120051 (-) | 762 | WP_016804847.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13961.18 Da Isoelectric Point: 9.8004
>NTDB_id=291901 DIW83_RS10340 WP_016804844.1 2115577..2115957(-) (xcpV) [Acinetobacter nosocomialis strain NCTC 8102]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKINVQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKINVQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=291901 DIW83_RS10340 WP_016804844.1 2115577..2115957(-) (xcpV) [Acinetobacter nosocomialis strain NCTC 8102]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTGGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAAATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTAATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTGGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAAATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTAATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |