Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DIW83_RS02005 Genome accession   NZ_CP029351
Coordinates   419567..420202 (-) Length   211 a.a.
NCBI ID   WP_004884597.1    Uniprot ID   K9BQS5
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414567..425202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS01970 (DIW83_01970) mlaE 414896..415672 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  DIW83_RS01975 (DIW83_01975) - 415672..416355 (+) 684 WP_016804171.1 outer membrane lipid asymmetry maintenance protein MlaD -
  DIW83_RS01980 (DIW83_01980) - 416382..417023 (+) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  DIW83_RS01985 (DIW83_01985) - 417035..417322 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  DIW83_RS01990 (DIW83_01990) - 417396..418409 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  DIW83_RS01995 (DIW83_01995) - 418567..419148 (+) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  DIW83_RS02000 (DIW83_02000) - 419163..419564 (+) 402 WP_004884602.1 NUDIX hydrolase -
  DIW83_RS02005 (DIW83_02005) comF 419567..420202 (-) 636 WP_004884597.1 ComF family protein Machinery gene
  DIW83_RS02010 (DIW83_02010) recG 420195..422240 (-) 2046 WP_016804172.1 ATP-dependent DNA helicase RecG -
  DIW83_RS02015 (DIW83_02015) - 422261..423076 (+) 816 WP_016804173.1 NAD(P)H-binding protein -
  DIW83_RS02020 (DIW83_02020) - 423156..424142 (+) 987 WP_025465644.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24642.88 Da        Isoelectric Point: 9.9089

>NTDB_id=291891 DIW83_RS02005 WP_004884597.1 419567..420202(-) (comF) [Acinetobacter nosocomialis strain NCTC 8102]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKIQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=291891 DIW83_RS02005 WP_004884597.1 419567..420202(-) (comF) [Acinetobacter nosocomialis strain NCTC 8102]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTCTTACAGCAAATAAAATTTCCTAAGATACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9BQS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948

Multiple sequence alignment