Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DIR46_RS17060 Genome accession   NZ_CP029343
Coordinates   3739841..3741301 (+) Length   486 a.a.
NCBI ID   WP_109346299.1    Uniprot ID   A0A2S2DKR7
Organism   Massilia oculi strain CCUG 43427     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3734841..3746301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIR46_RS17035 (DIR46_17035) - 3735318..3736222 (+) 905 Protein_3412 ABC transporter permease -
  DIR46_RS17040 (DIR46_17040) - 3736224..3737021 (+) 798 WP_109346295.1 ABC transporter ATP-binding protein -
  DIR46_RS17045 (DIR46_17045) - 3737121..3737924 (+) 804 WP_109346296.1 inner membrane protein YpjD -
  DIR46_RS17050 (DIR46_17050) - 3737924..3738172 (+) 249 WP_205288989.1 PP0621 family protein -
  DIR46_RS17055 (DIR46_17055) - 3738173..3739825 (+) 1653 WP_109346298.1 PAS domain-containing sensor histidine kinase -
  DIR46_RS17060 (DIR46_17060) pilR 3739841..3741301 (+) 1461 WP_109346299.1 sigma-54 dependent transcriptional regulator Regulator
  DIR46_RS17065 (DIR46_17065) - 3741893..3744823 (+) 2931 WP_109346300.1 ribonucleoside-diphosphate reductase subunit alpha -
  DIR46_RS17070 (DIR46_17070) - 3745052..3746155 (+) 1104 WP_205288990.1 ribonucleotide-diphosphate reductase subunit beta -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 51690.42 Da        Isoelectric Point: 4.9218

>NTDB_id=291802 DIR46_RS17060 WP_109346299.1 3739841..3741301(+) (pilR) [Massilia oculi strain CCUG 43427]
MSAPRILVLDDEADLRELLEITLLKMGLDVDSAATLRQARSLFEEHQYALVLTDMRLPDGLGLELVREVAASGKGTPVAV
ITAYGSAENAVVALKAGAFDYIAKPVALDALRVMVRSALKLSEGGAAAADGGALASRMIGHSPAMQSLRAQIARLARSMA
PISITGESGSGKELAAREIHAQSSRAGKPFVAVNCGAIPETLMEAEFFGYRKGAFTGAAEERDGFFQAANGGTLMLDEVA
DLPLAMQVKLLRAIQERRVRKIGATGEEPVDVRIISATHQDLARCVETGKFRQDLFYRLNVIELALPPLRERLDDLALLA
NGILDRLAGPGQASLGPGVLEALKAYSFPGNVRELENVLERALAFANDGVIQVGDLSLKAARPAEGGRSETASPVAAAEP
APAPAIPSIELPPLPDPRPVAAPVALGPAELPSNLPEYLEQVERDIIGRALQQTQFNRTQAAALLGISVRQLRYQMQKLE
ICAPED

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=291802 DIR46_RS17060 WP_109346299.1 3739841..3741301(+) (pilR) [Massilia oculi strain CCUG 43427]
ATGAGCGCGCCCCGCATCCTGGTGCTCGACGACGAAGCCGACCTGCGCGAGCTGCTCGAGATCACCCTGCTCAAGATGGG
CCTGGACGTCGACAGCGCCGCCACGTTGCGCCAGGCGCGTAGTCTGTTTGAAGAGCACCAGTACGCACTGGTGCTCACTG
ATATGCGCCTGCCGGATGGCCTGGGGCTGGAACTGGTGCGCGAGGTCGCCGCCTCGGGCAAGGGCACGCCGGTCGCCGTG
ATCACCGCCTACGGCAGCGCCGAGAACGCGGTGGTGGCGCTGAAGGCCGGCGCCTTCGACTACATCGCCAAGCCGGTGGC
GCTCGACGCGCTGCGCGTGATGGTGCGCTCGGCCCTGAAATTGTCGGAAGGGGGCGCCGCGGCGGCCGACGGCGGCGCGC
TGGCCTCGCGCATGATCGGCCATTCGCCGGCGATGCAGTCGCTGCGCGCCCAGATCGCGCGCCTGGCGCGCTCGATGGCG
CCGATCTCGATCACCGGCGAATCGGGCAGCGGCAAGGAGCTGGCGGCGCGCGAGATCCACGCCCAGAGTTCGCGTGCCGG
CAAACCCTTCGTGGCGGTGAACTGCGGCGCCATCCCCGAAACCCTGATGGAGGCCGAGTTCTTCGGCTACCGCAAGGGCG
CCTTCACCGGCGCGGCCGAGGAGCGCGATGGCTTCTTCCAGGCCGCCAACGGCGGCACCCTGATGCTGGACGAGGTGGCG
GACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACGGGCGA
GGAACCGGTCGACGTGCGCATCATCAGCGCCACCCACCAGGACCTGGCGCGCTGCGTCGAGACGGGCAAGTTCAGGCAAG
ACCTGTTTTATCGCCTGAACGTGATCGAGCTGGCGCTGCCGCCGCTGCGCGAGCGGCTGGACGACCTGGCCCTGCTGGCG
AATGGCATCCTGGACCGGCTGGCCGGGCCGGGGCAGGCCTCGCTCGGGCCGGGCGTGCTGGAGGCATTGAAGGCGTATTC
CTTCCCTGGCAATGTGCGCGAGCTGGAGAACGTGCTGGAGCGGGCGCTGGCGTTCGCCAACGATGGCGTGATCCAGGTCG
GGGACCTGTCGCTCAAGGCGGCGCGGCCGGCGGAAGGAGGGCGGAGCGAGACGGCTTCGCCGGTCGCGGCGGCGGAGCCG
GCTCCGGCGCCGGCGATTCCTTCCATTGAACTGCCTCCTTTACCCGATCCCAGGCCGGTAGCTGCGCCGGTCGCCCTCGG
CCCGGCCGAACTGCCGAGCAACCTGCCCGAATATCTTGAGCAGGTCGAACGCGACATCATCGGGCGCGCGCTGCAGCAGA
CCCAGTTCAACCGCACCCAGGCGGCAGCCCTGCTCGGGATCAGCGTACGCCAGTTGCGCTACCAGATGCAGAAGCTGGAG
ATCTGCGCGCCCGAGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-304)

Bacterial regulatory protein, Fis family (HTH_8)

(439-479)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2DKR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.066

99.588

0.519
  pilR Acinetobacter baumannii strain A118

44.606

99.177

0.442

Multiple sequence alignment