Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCC13826_RS06640 Genome accession   NC_009802
Coordinates   1314037..1314807 (-) Length   256 a.a.
NCBI ID   WP_012140065.1    Uniprot ID   A7ZEE9
Organism   Campylobacter concisus 13826     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1309037..1319807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCC13826_RS06610 (CCC13826_2011) hemW 1309571..1310617 (+) 1047 WP_048809845.1 radical SAM family heme chaperone HemW -
  CCC13826_RS06615 (CCC13826_2010) tatB 1310685..1311083 (+) 399 WP_012140063.1 Sec-independent protein translocase protein TatB -
  CCC13826_RS06620 (CCC13826_2009) tatC 1311083..1311856 (+) 774 WP_048809846.1 twin-arginine translocase subunit TatC -
  CCC13826_RS06625 (CCC13826_2008) queA 1311849..1312871 (+) 1023 WP_048809847.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CCC13826_RS06630 (CCC13826_2006) - 1312868..1313662 (+) 795 WP_012140064.1 hypothetical protein -
  CCC13826_RS06635 (CCC13826_2007) ruvX 1313657..1314040 (-) 384 WP_048809848.1 Holliday junction resolvase RuvX -
  CCC13826_RS06640 (CCC13826_2005) dprA 1314037..1314807 (-) 771 WP_012140065.1 DNA-processing protein DprA Machinery gene
  CCC13826_RS06645 (CCC13826_2004) - 1314804..1316255 (-) 1452 WP_012140066.1 divergent polysaccharide deacetylase family protein -
  CCC13826_RS06650 (CCC13826_2003) ilvC 1316259..1317281 (-) 1023 WP_012140067.1 ketol-acid reductoisomerase -
  CCC13826_RS06655 (CCC13826_2001) - 1317429..1318247 (+) 819 WP_012140069.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 27832.30 Da        Isoelectric Point: 6.0464

>NTDB_id=29180 CCC13826_RS06640 WP_012140065.1 1314037..1314807(-) (dprA) [Campylobacter concisus 13826]
MKLEIIPEALNRLKNPPKELNFIGDTSLLSMPKVAVVGSRKASVYTKECVTALCAALKSANVCVVSGGAIGVDITAHKAA
MPRTIGVFANGLDIIYPAQNKVAIREIYENGLALSEYDEGEPPIAYRFLERNRIVVGLAQALVVAQADLRSGSMQSARLA
NELKIPLFVLPQRINESNGTNALLASKKAELIDDYVKFASLFGEVKVQEKTSDEILKFCKNGVSLDEALSKFGEIIYEYE
LDGLVEISNLRVKSAL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=29180 CCC13826_RS06640 WP_012140065.1 1314037..1314807(-) (dprA) [Campylobacter concisus 13826]
ATGAAACTTGAAATCATCCCAGAAGCGCTAAATAGGCTAAAAAATCCCCCAAAAGAGCTAAATTTCATAGGCGACACCTC
GCTTCTTAGCATGCCAAAAGTCGCAGTCGTTGGCTCAAGAAAGGCAAGCGTTTATACAAAAGAGTGTGTCACGGCACTTT
GCGCAGCGCTAAAAAGCGCAAATGTCTGCGTGGTAAGTGGTGGGGCTATCGGCGTGGATATCACAGCGCACAAGGCTGCC
ATGCCACGAACTATCGGTGTTTTTGCAAATGGGCTTGACATCATCTATCCAGCGCAAAACAAAGTTGCGATAAGAGAAAT
TTATGAAAACGGCTTGGCTCTAAGTGAGTATGACGAGGGCGAGCCACCGATCGCTTATAGATTTTTAGAGAGAAACCGCA
TAGTTGTGGGGCTTGCACAAGCTCTTGTGGTAGCTCAAGCTGATCTAAGAAGTGGCTCGATGCAAAGTGCAAGGCTTGCA
AATGAGCTTAAAATCCCTCTCTTTGTCCTGCCTCAGCGCATAAATGAGAGCAATGGGACAAATGCCTTACTGGCTAGCAA
AAAGGCCGAGCTTATCGATGATTACGTTAAATTTGCCTCACTTTTTGGCGAGGTAAAAGTGCAAGAAAAAACAAGCGATG
AGATCTTGAAATTTTGCAAAAATGGCGTTAGCCTTGATGAAGCATTGTCTAAATTTGGCGAGATCATCTACGAGTACGAG
CTTGATGGGCTAGTTGAAATTTCAAATTTAAGAGTAAAAAGCGCGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZEE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.223

91.016

0.512
  dprA Helicobacter pylori 26695

45.817

98.047

0.449

Multiple sequence alignment