Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DIE29_RS13000 Genome accession   NZ_CP029331
Coordinates   2726520..2727899 (-) Length   459 a.a.
NCBI ID   WP_114650100.1    Uniprot ID   -
Organism   Pseudothauera hydrothermalis strain GD-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2721520..2732899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIE29_RS12970 - 2722153..2722653 (-) 501 WP_159074649.1 acyltransferase -
  DIE29_RS15010 - 2722650..2722823 (-) 174 WP_114650098.1 methyltransferase domain-containing protein -
  DIE29_RS12980 - 2722846..2723880 (-) 1035 WP_114649170.1 IS630 family transposase -
  DIE29_RS12985 - 2723896..2724048 (-) 153 WP_237269462.1 hypothetical protein -
  DIE29_RS12990 - 2724238..2725371 (-) 1134 WP_108080783.1 glycosyltransferase -
  DIE29_RS12995 - 2725368..2726114 (-) 747 WP_108080784.1 class I SAM-dependent methyltransferase -
  DIE29_RS13000 pilR 2726520..2727899 (-) 1380 WP_114650100.1 sigma-54-dependent transcriptional regulator Regulator
  DIE29_RS13005 - 2727896..2729449 (-) 1554 WP_205409740.1 sensor histidine kinase -
  DIE29_RS13010 - 2729462..2729704 (-) 243 WP_114650102.1 PP0621 family protein -
  DIE29_RS13015 - 2729789..2730958 (-) 1170 WP_114650103.1 pyridoxal phosphate-dependent aminotransferase -
  DIE29_RS13020 mtnA 2731057..2732133 (+) 1077 WP_114650104.1 S-methyl-5-thioribose-1-phosphate isomerase -
  DIE29_RS13025 - 2732133..2732789 (+) 657 WP_114650105.1 class II aldolase/adducin family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50862.23 Da        Isoelectric Point: 6.1408

>NTDB_id=291728 DIE29_RS13000 WP_114650100.1 2726520..2727899(-) (pilR) [Pseudothauera hydrothermalis strain GD-2]
MINEDRRAPPRAADVLVVDDEDDIRELIELSLLRMGLACDTAGSVGEARALLAARRYRLCLTDMRLPDGDGLELVEYIQC
HQPGSQVAVITAYGCIDTAIRALKLGAFDFVTKPVELKRLRQLVAHALRSPAENTLDAGGRQLIGRSAALEQLRGQVVKL
ARNQAPVFIYGESGTGKEVIARLIHTLGPRAGGPFVPVNCGAISPELMESEFFGHKKGSFTGAASDKQGLFQAAHGGTLF
LDEVAELPLAMQVKLLRAIQERAVRPVGAHGEEPVDVRILSASHRDLAQLVADNRFRQDLYFRINVITLRVPPLRERPED
IPDLAAHVLARLAEREGTAPRRLSPAALAALQQYAFPGNVRELENLLERACALCEGDEIGPQDVDLYPTEGLLRAMQRPD
TGEFESRAEPRALDEDNDDERIRVLRMLDETRWNRSAAARRLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=291728 DIE29_RS13000 WP_114650100.1 2726520..2727899(-) (pilR) [Pseudothauera hydrothermalis strain GD-2]
ATGATCAACGAAGACCGCAGGGCTCCCCCGCGCGCCGCCGATGTGTTGGTGGTCGATGACGAAGACGACATCCGCGAACT
GATCGAACTGTCATTGCTGCGCATGGGCTTGGCCTGCGACACTGCCGGCTCGGTGGGCGAGGCACGCGCGCTGTTGGCGG
CGCGCCGCTACCGCCTGTGCCTGACCGACATGCGTCTGCCCGATGGCGACGGGCTGGAACTGGTCGAATACATCCAGTGC
CACCAGCCTGGCTCACAAGTGGCGGTGATTACCGCCTATGGCTGCATCGACACCGCCATTCGCGCGCTCAAACTGGGCGC
CTTCGACTTCGTTACCAAACCGGTGGAACTCAAGCGGCTGCGCCAGCTGGTCGCCCATGCCTTGCGCAGCCCCGCCGAAA
ATACGCTGGATGCCGGCGGGCGTCAGCTCATTGGCCGGTCGGCCGCGCTCGAACAACTGCGTGGTCAAGTCGTCAAGCTG
GCGCGTAACCAGGCGCCGGTTTTCATTTATGGCGAATCGGGCACCGGCAAGGAGGTCATCGCCCGCCTGATCCACACGCT
GGGCCCACGCGCAGGCGGTCCCTTCGTGCCGGTCAATTGCGGCGCCATCTCGCCCGAGCTGATGGAAAGCGAGTTCTTTG
GCCATAAAAAGGGCAGCTTTACCGGTGCCGCCAGCGACAAACAGGGCCTGTTTCAGGCCGCCCACGGCGGCACCTTGTTT
CTGGACGAGGTTGCCGAACTGCCGCTTGCCATGCAGGTGAAGCTCTTGCGTGCCATTCAGGAGCGCGCCGTGCGCCCAGT
GGGTGCGCATGGCGAAGAACCGGTGGATGTACGCATTCTGTCCGCTTCGCACCGCGACCTGGCCCAATTGGTGGCCGACA
ACCGCTTTCGCCAAGACCTCTACTTTCGCATCAACGTCATCACCCTGCGGGTGCCGCCCTTACGCGAACGCCCGGAAGAC
ATTCCGGACCTGGCCGCTCATGTGCTGGCCCGTCTGGCCGAGCGCGAAGGCACCGCCCCGCGCCGCCTGTCGCCTGCCGC
GCTGGCGGCCCTTCAGCAGTACGCCTTCCCGGGCAATGTGCGCGAGCTGGAAAACCTTCTGGAGCGTGCCTGCGCCTTGT
GTGAGGGCGACGAAATCGGACCGCAGGACGTCGATCTCTATCCAACCGAAGGCTTGCTGCGTGCTATGCAGCGCCCGGAC
ACTGGTGAATTCGAATCTCGCGCCGAGCCGCGCGCGCTGGACGAAGATAACGATGACGAACGCATCCGGGTGCTGCGTAT
GTTGGATGAAACCCGTTGGAACCGCTCCGCGGCGGCGCGCCGCTTGGGGATGACCCTGCGGCAGCTACGCTACCGGTTGC
AGAAGTGGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-124)

Bacterial regulatory protein, Fis family (HTH_8)

(420-456)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.912

98.911

0.593
  pilR Acinetobacter baumannii strain A118

48.025

100

0.503

Multiple sequence alignment