Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DIE29_RS10385 Genome accession   NZ_CP029331
Coordinates   2161833..2162630 (+) Length   265 a.a.
NCBI ID   WP_102041169.1    Uniprot ID   -
Organism   Pseudothauera hydrothermalis strain GD-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2156833..2167630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIE29_RS10360 - 2157148..2157888 (-) 741 WP_114649836.1 beta-ketoacyl-ACP reductase -
  DIE29_RS10365 - 2158002..2159744 (-) 1743 WP_114649837.1 PHA/PHB synthase family protein -
  DIE29_RS10370 - 2159831..2160061 (+) 231 WP_418332868.1 hypothetical protein -
  DIE29_RS10375 pgeF 2160109..2160855 (-) 747 WP_114649838.1 peptidoglycan editing factor PgeF -
  DIE29_RS10380 rluD 2160845..2161762 (-) 918 WP_205409725.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DIE29_RS10385 comL 2161833..2162630 (+) 798 WP_102041169.1 outer membrane protein assembly factor BamD Machinery gene
  DIE29_RS10390 - 2162683..2164128 (-) 1446 WP_114649840.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  DIE29_RS10395 - 2164540..2164902 (+) 363 WP_102041167.1 STAS/SEC14 domain-containing protein -
  DIE29_RS10400 - 2164899..2165753 (+) 855 WP_114649841.1 sulfurtransferase -
  DIE29_RS10405 queG 2165796..2166887 (-) 1092 WP_114649842.1 tRNA epoxyqueuosine(34) reductase QueG -
  DIE29_RS10410 tsaE 2166870..2167391 (+) 522 WP_102041165.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 30020.91 Da        Isoelectric Point: 6.5002

>NTDB_id=291724 DIE29_RS10385 WP_102041169.1 2161833..2162630(+) (comL) [Pseudothauera hydrothermalis strain GD-2]
MARFTLQSLAVIGALLLGGCGLLPEQIDETAGWNAQKLYSEAKASMSEGGYDRAIQLFEKLEARYPYGRFAQQAQIEIAY
AYYKSNEPALALAAADRFIRLHPNHPHVDYAYYLKGLVTFNEDLGLLGALANQDLSERDPKGSRESYDTFKELVTRFPDS
RYADDARLRMRYLVNALAAHEVHVARYYYRRGAHVAAINRAQAAIANYPQSPAIEEALFLLVKSYDALGMTDLRDDAERV
MRKNFPDSVYFAGGPADTRPWWQFW

Nucleotide


Download         Length: 798 bp        

>NTDB_id=291724 DIE29_RS10385 WP_102041169.1 2161833..2162630(+) (comL) [Pseudothauera hydrothermalis strain GD-2]
ATGGCTAGGTTCACCTTGCAAAGTTTAGCGGTTATTGGCGCTTTACTGCTGGGCGGTTGTGGTCTGTTGCCCGAGCAGAT
CGACGAGACGGCAGGCTGGAACGCCCAGAAACTTTACTCCGAAGCCAAGGCTTCAATGAGCGAAGGCGGCTATGACCGAG
CAATCCAGCTGTTCGAGAAGCTCGAAGCTCGCTACCCTTACGGCCGCTTCGCACAGCAGGCGCAAATCGAGATCGCCTAC
GCTTACTACAAATCGAACGAACCCGCGCTGGCGCTGGCGGCTGCCGACCGTTTCATCCGGCTGCATCCAAACCACCCGCA
TGTCGACTACGCCTACTATCTGAAAGGGCTGGTCACGTTCAACGAAGACCTGGGTCTGCTGGGCGCTTTGGCCAACCAGG
ATTTGTCCGAACGCGACCCTAAAGGCAGCAGGGAGTCTTACGACACCTTCAAGGAGCTTGTCACCCGCTTCCCGGATAGC
CGTTACGCGGACGACGCACGACTGCGAATGCGCTATCTGGTCAACGCGCTGGCCGCGCACGAGGTCCATGTGGCCCGTTA
TTACTACCGTCGCGGTGCCCATGTTGCCGCAATCAACCGCGCCCAGGCAGCCATTGCAAACTACCCACAATCGCCGGCGA
TAGAAGAGGCGTTGTTTTTGCTCGTAAAGAGTTACGACGCCCTCGGTATGACCGATCTGCGCGATGACGCCGAACGGGTA
ATGCGTAAAAACTTCCCGGACAGCGTCTATTTTGCCGGCGGTCCTGCAGACACACGCCCATGGTGGCAATTTTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.855

98.868

0.483
  comL Neisseria gonorrhoeae MS11

47.126

98.491

0.464

Multiple sequence alignment