Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DGM93_RS15720 Genome accession   NZ_CP029277
Coordinates   3665765..3667219 (+) Length   484 a.a.
NCBI ID   WP_039568287.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. phaseoli strain PR1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3660765..3672219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM93_RS15700 - 3660858..3661100 (-) 243 Protein_3077 hypothetical protein -
  DGM93_RS15705 (DGM93_16515) sucD 3661580..3662455 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  DGM93_RS15710 (DGM93_16520) sucC 3662480..3663649 (-) 1170 WP_039568282.1 ADP-forming succinate--CoA ligase subunit beta -
  DGM93_RS15715 (DGM93_16525) - 3663881..3665494 (+) 1614 WP_039568284.1 HAMP domain-containing sensor histidine kinase -
  DGM93_RS15720 (DGM93_16530) pilR 3665765..3667219 (+) 1455 WP_039568287.1 sigma-54 dependent transcriptional regulator Regulator
  DGM93_RS15725 (DGM93_16535) - 3667416..3667562 (-) 147 WP_080948799.1 serine/threonine protein kinase -
  DGM93_RS15730 (DGM93_16540) - 3667624..3667743 (-) 120 WP_039568289.1 hypothetical protein -
  DGM93_RS15735 (DGM93_16550) pilB 3667988..3669697 (-) 1710 WP_180959844.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DGM93_RS15740 (DGM93_16555) - 3669789..3670244 (-) 456 WP_039568290.1 pilin -
  DGM93_RS15745 (DGM93_16560) pilA 3670354..3670794 (-) 441 WP_039568292.1 pilin Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52331.04 Da        Isoelectric Point: 6.6960

>NTDB_id=291574 DGM93_RS15720 WP_039568287.1 3665765..3667219(+) (pilR) [Xanthomonas phaseoli pv. phaseoli strain PR1]
MGGDPLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=291574 DGM93_RS15720 WP_039568287.1 3665765..3667219(+) (pilR) [Xanthomonas phaseoli pv. phaseoli strain PR1]
TTGGGCGGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACCG
CTGCCAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAATCCCTACGATTTGTGCCTGACCGACATGCGGTTGCCAGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTTGGCGACTCCAGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGTACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAAATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGATCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCGGCCATCAT
CGCGCGGCTGGCACACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment