Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DGN02_RS16550 Genome accession   NZ_CP029273
Coordinates   3899465..3900919 (+) Length   484 a.a.
NCBI ID   WP_170922314.1    Uniprot ID   -
Organism   Xanthomonas citri strain T21     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3894465..3905919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGN02_RS16530 (DGN02_17155) - 3894884..3895128 (-) 245 Protein_3232 hypothetical protein -
  DGN02_RS16535 (DGN02_17160) sucD 3895281..3896156 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  DGN02_RS16540 (DGN02_17165) sucC 3896181..3897350 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  DGN02_RS16545 (DGN02_17170) - 3897582..3899195 (+) 1614 WP_007965357.1 HAMP domain-containing sensor histidine kinase -
  DGN02_RS16550 (DGN02_17175) pilR 3899465..3900919 (+) 1455 WP_170922314.1 sigma-54 dependent transcriptional regulator Regulator
  DGN02_RS16555 (DGN02_17185) pilB 3901531..3903267 (-) 1737 WP_099207226.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DGN02_RS16560 (DGN02_17190) - 3903367..3904023 (-) 657 WP_158525796.1 methionine biosynthesis protein MetW -
  DGN02_RS16565 (DGN02_17195) - 3904016..3905062 (-) 1047 WP_099207228.1 glycosyltransferase -
  DGN02_RS16570 (DGN02_17200) - 3905059..3905853 (-) 795 WP_099207229.1 glycosyltransferase family A protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52479.25 Da        Isoelectric Point: 6.9090

>NTDB_id=291537 DGN02_RS16550 WP_170922314.1 3899465..3900919(+) (pilR) [Xanthomonas citri strain T21]
MGHHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=291537 DGN02_RS16550 WP_170922314.1 3899465..3900919(+) (pilR) [Xanthomonas citri strain T21]
TTGGGCCACCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCTCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCTAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATTACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment