Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AYP36_RS16310 Genome accession   NZ_CP034808
Coordinates   3355470..3356207 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 08-3914     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3350470..3361207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP36_RS16280 yfiL 3350628..3350993 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  AYP36_RS16285 aroF 3351203..3352273 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AYP36_RS16290 tyrA 3352284..3353405 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AYP36_RS16295 pheA 3353448..3354608 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  AYP36_RS16300 pheL 3354707..3354754 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AYP36_RS16305 raiA 3354858..3355199 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AYP36_RS16310 comL 3355470..3356207 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AYP36_RS16315 rluD 3356342..3357322 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AYP36_RS16320 yfiH 3357319..3358050 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  AYP36_RS16325 clpC 3358180..3360753 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=291413 AYP36_RS16310 WP_000197686.1 3355470..3356207(-) (comL) [Escherichia coli strain 08-3914]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=291413 AYP36_RS16310 WP_000197686.1 3355470..3356207(-) (comL) [Escherichia coli strain 08-3914]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376