Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   DG474_RS03155 Genome accession   NZ_CP029257
Coordinates   629991..631223 (+) Length   410 a.a.
NCBI ID   WP_255778787.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 624991..636223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS03120 (DG474_03185) - 625750..626712 (+) 963 WP_255778786.1 glycosyltransferase family 2 protein -
  DG474_RS03125 (DG474_03190) - 626862..627506 (+) 645 WP_084878704.1 hypothetical protein -
  DG474_RS03130 (DG474_03195) - 627545..627646 (+) 102 Protein_563 glycosyltransferase -
  DG474_RS03135 (DG474_03200) - 627722..627925 (-) 204 WP_002874767.1 ferredoxin -
  DG474_RS03140 (DG474_03205) - 627971..628480 (+) 510 WP_000410192.1 SAG1386/EF1546 family surface-associated protein -
  DG474_RS03145 (DG474_03210) cmk 628490..629164 (+) 675 WP_000849409.1 (d)CMP kinase -
  DG474_RS03150 (DG474_03215) - 629283..629789 (+) 507 WP_042902706.1 dihydrofolate reductase -
  DG474_RS03155 (DG474_03225) clpX 629991..631223 (+) 1233 WP_255778787.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  DG474_RS03160 (DG474_03230) yihA 631232..631819 (+) 588 WP_000405196.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DG474_RS03165 (DG474_03235) - 631829..632209 (+) 381 WP_001140420.1 RidA family protein -
  DG474_RS03170 (DG474_03240) rapZ 632261..633151 (+) 891 WP_255778788.1 RNase adapter RapZ -
  DG474_RS03175 (DG474_03245) - 633148..634125 (+) 978 WP_042768608.1 YvcK family protein -
  DG474_RS03180 (DG474_03250) whiA 634122..635033 (+) 912 WP_042768607.1 DNA-binding protein WhiA -
  DG474_RS03185 (DG474_03255) - 635066..636034 (-) 969 WP_042768605.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45716.29 Da        Isoelectric Point: 4.4269

>NTDB_id=291409 DG474_RS03155 WP_255778787.1 629991..631223(+) (clpX) [Streptococcus oralis strain CCUG 53468]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIWEELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=291409 DG474_RS03155 WP_255778787.1 629991..631223(+) (clpX) [Streptococcus oralis strain CCUG 53468]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAGAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTTGGGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAGCTCCTCAATATCTTGAATCACTATGTGATCGGTCAGGATCGT
GCTAAACGTGCCTTGGCAGTGGCAGTTTACAACCACTACAAACGCATCAATTTCCACGATACTCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCTGGGAAAACCTTCTTGGCTCAGACTTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCAGATGCGACAGCTCTGACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCCGCTGACTTTAACATCGAACGTGCAGAGCGTGGGATTATTTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAATGTGTCTATCACACGTGACGTATCTGGTGAAGGTGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTCGCTAGCGTGCCGCCTCAAGGAGGACGCAAACATCCACAACAAGAGATGATTCAGGTGGATACT
AAAAATATCCTCTTTATCGTGGGTGGTGCTTTTGATGGCATCGAAGAAATCGTTAAACAACGTCTGGGTGAAAAAGTTAT
TGGCTTTGGCCAAAATAACAAGGCGATTGACGAAAACAGCTCTTACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCCATTGAACGCAAAACAGGTGCGCGTGGTCTTCGTTCTATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAAGTGCCAAGTCAAGAAAATGTGAAATTGGTCCGCATCACGAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment