Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B1H56_RS06790 Genome accession   NZ_CP029256
Coordinates   1434681..1436030 (-) Length   449 a.a.
NCBI ID   WP_066523489.1    Uniprot ID   -
Organism   Christensenella minuta strain DSM 22607     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429681..1441030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1H56_RS06785 (B1H56_06780) - 1433466..1434566 (-) 1101 WP_066523488.1 PIN/TRAM domain-containing protein -
  B1H56_RS06790 (B1H56_06785) radA 1434681..1436030 (-) 1350 WP_066523489.1 DNA repair protein RadA Machinery gene
  B1H56_RS06795 (B1H56_06790) - 1436044..1437234 (-) 1191 WP_147554744.1 hypothetical protein -
  B1H56_RS06800 (B1H56_06795) ispD 1437253..1438422 (-) 1170 WP_066523491.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  B1H56_RS06805 (B1H56_06800) - 1438426..1438668 (-) 243 WP_066523492.1 RNA-binding S4 domain-containing protein -
  B1H56_RS06810 (B1H56_06805) - 1438981..1439319 (-) 339 WP_258107099.1 HU family DNA-binding protein -
  B1H56_RS06815 (B1H56_06810) mazG 1439352..1440824 (-) 1473 WP_169797777.1 nucleoside triphosphate pyrophosphohydrolase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 48345.01 Da        Isoelectric Point: 8.0318

>NTDB_id=291383 B1H56_RS06790 WP_066523489.1 1434681..1436030(-) (radA) [Christensenella minuta strain DSM 22607]
MAKSKTQFICSECGYASGKWSGQCPSCGSWNTMAEELVAAAPVGMGKSASAPGRIVTFDKIPLELGKRFRTEIEEFDRVL
GGGVVPGGVTLAGGEPGIGKSTLFLQVAKKLTAYGNVLYVSGEESPSQIKMRAKRLGVEENIYLMAETEVGSILAGVEQL
SPKFLIVDSIQTLYDADLSSAPGSVGQVRGCASRITQAAKHMGMAAFIVGHVTKEGAIAGPRVLEHIVDTVLYFEGERTS
NLRILRAVKNRFGSTDEIGVFEMRDAGMMEVKNPTMLFEGDFGQDMSGVSIFAATQGTRPMLLEIQALCAHTQLNIPRRL
CSGIDQNRLYMVCAVLEKKIGLKLYQQDIFVNVAGGIKVREHAADLAMAVSIVSSLRNLGVPRDTAFIGEVGLSGEIRHV
AQLERRVLECAKMGIGRVFVPKNSIERGADYKIRVEGVSTLSDVLAKVF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=291383 B1H56_RS06790 WP_066523489.1 1434681..1436030(-) (radA) [Christensenella minuta strain DSM 22607]
GTGGCGAAAAGCAAAACGCAATTTATATGCAGCGAATGCGGATATGCGAGCGGAAAATGGTCGGGCCAGTGCCCGTCCTG
CGGGAGCTGGAATACCATGGCGGAAGAGCTTGTGGCCGCCGCCCCCGTGGGGATGGGGAAAAGCGCGTCCGCTCCCGGGC
GTATCGTGACTTTTGACAAGATTCCGCTGGAGCTCGGGAAACGGTTCCGGACGGAAATCGAGGAATTCGACCGCGTCCTT
GGCGGCGGCGTCGTCCCGGGAGGGGTTACCTTGGCGGGCGGCGAACCGGGGATCGGAAAATCCACCCTGTTCCTGCAGGT
GGCAAAGAAACTGACGGCCTACGGAAATGTGCTTTATGTGTCGGGGGAAGAATCGCCGTCGCAGATCAAAATGCGCGCGA
AACGCCTTGGTGTGGAGGAAAACATTTATCTCATGGCGGAGACGGAAGTAGGCAGTATCCTCGCGGGCGTGGAACAGCTT
TCGCCGAAATTTCTCATCGTGGATTCCATCCAGACGCTTTACGACGCGGACCTCTCGTCGGCGCCGGGCAGCGTGGGGCA
GGTGCGCGGCTGTGCCTCGCGCATCACGCAGGCCGCCAAGCATATGGGGATGGCTGCCTTTATCGTGGGGCATGTGACAA
AGGAAGGCGCAATCGCGGGGCCGCGCGTTTTAGAGCATATTGTGGATACGGTCCTTTATTTTGAAGGAGAACGCACATCA
AACCTTCGCATCCTGCGGGCGGTAAAGAACCGCTTCGGCTCCACGGACGAGATCGGCGTATTCGAGATGCGCGACGCCGG
AATGATGGAAGTGAAAAATCCAACTATGCTTTTTGAAGGGGATTTCGGGCAGGATATGAGCGGCGTATCTATTTTTGCCG
CCACCCAGGGGACGCGGCCCATGCTGCTTGAAATACAGGCTTTGTGCGCGCATACCCAGCTTAATATCCCGCGGCGGCTC
TGTTCGGGTATCGACCAGAACCGTCTTTATATGGTATGCGCAGTTTTGGAAAAGAAAATCGGTTTAAAACTGTATCAGCA
GGATATTTTTGTGAACGTTGCGGGCGGCATCAAGGTGCGCGAGCACGCGGCAGACCTTGCGATGGCGGTTTCGATTGTGT
CGTCTTTGCGCAACCTCGGCGTGCCGAGGGATACGGCCTTTATCGGCGAGGTCGGGCTTTCGGGAGAGATTCGCCATGTG
GCCCAGCTTGAAAGGCGGGTTCTGGAATGTGCCAAGATGGGGATCGGCCGGGTATTTGTGCCCAAAAACAGCATCGAGCG
CGGCGCGGACTACAAGATAAGGGTGGAAGGCGTGAGCACGCTGTCGGATGTGCTTGCCAAAGTTTTTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

50.33

100

0.51
  radA Streptococcus mitis SK321

50.33

100

0.51
  radA Streptococcus pneumoniae Rx1

50.33

100

0.51
  radA Streptococcus mitis NCTC 12261

50.33

100

0.51
  radA Streptococcus pneumoniae R6

50.33

100

0.51
  radA Streptococcus pneumoniae TIGR4

50.33

100

0.51
  radA Bacillus subtilis subsp. subtilis str. 168

50.22

100

0.508

Multiple sequence alignment