Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A0I22_RS22125 Genome accession   NZ_CP034803
Coordinates   4325024..4325761 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2009C-3554     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4320024..4330761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0I22_RS22095 yfiL 4320182..4320547 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  A0I22_RS22100 aroF 4320757..4321827 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A0I22_RS22105 tyrA 4321838..4322959 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A0I22_RS22110 pheA 4323002..4324162 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  A0I22_RS22115 pheL 4324261..4324308 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A0I22_RS22120 raiA 4324412..4324753 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A0I22_RS22125 comL 4325024..4325761 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A0I22_RS22130 rluD 4325896..4326876 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A0I22_RS22135 yfiH 4326873..4327604 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  A0I22_RS22140 clpC 4327734..4330307 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=291264 A0I22_RS22125 WP_000197686.1 4325024..4325761(-) (comL) [Escherichia coli strain 2009C-3554]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=291264 A0I22_RS22125 WP_000197686.1 4325024..4325761(-) (comL) [Escherichia coli strain 2009C-3554]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376