Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   DEH84_RS01185 Genome accession   NZ_CP029210
Coordinates   270092..271630 (+) Length   512 a.a.
NCBI ID   WP_109034004.1    Uniprot ID   A0A2U8FMV3
Organism   Aquabacterium olei strain NBRC 110486     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 265092..276630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH84_RS01160 (DEH84_01160) argS 265495..267183 (+) 1689 WP_109033995.1 arginine--tRNA ligase -
  DEH84_RS01165 (DEH84_01165) - 267195..267875 (+) 681 WP_109033997.1 SPOR domain-containing protein -
  DEH84_RS01170 (DEH84_01170) - 267905..268561 (+) 657 WP_109034000.1 thiol:disulfide interchange protein DsbA/DsbL -
  DEH84_RS01175 (DEH84_01175) lptA 268684..269286 (+) 603 WP_109034002.1 lipopolysaccharide transport periplasmic protein LptA -
  DEH84_RS01180 (DEH84_01180) lptB 269297..270079 (+) 783 WP_109038135.1 LPS export ABC transporter ATP-binding protein -
  DEH84_RS01185 (DEH84_01185) rpoN/rpoN1 270092..271630 (+) 1539 WP_109034004.1 RNA polymerase factor sigma-54 Machinery gene
  DEH84_RS01190 (DEH84_01190) - 271763..273406 (+) 1644 WP_109034006.1 THUMP domain-containing protein -
  DEH84_RS01195 (DEH84_01195) - 273546..274322 (-) 777 WP_245932647.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 57183.45 Da        Isoelectric Point: 4.6834

>NTDB_id=291227 DEH84_RS01185 WP_109034004.1 270092..271630(+) (rpoN/rpoN1) [Aquabacterium olei strain NBRC 110486]
MKPSLQFRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEMNPFLEPEEEFPAVDTAASLEFERQRNERTSSEEGSSS
SEASPSEGEAGGLDTVEIGTTERDDWENGTERDDFDGIRETPSRNNDGDDDFDPLERNAVAISLQEHLRQQLLGTRLNAQ
DMAAVEILIESLNEDGYLADPLDEIAASLLPEEADEDMRDELLSRLRCALSWLQHMDPTGVGASSLSECLVLQLRTLEEE
AARDLAIVICLHHLELLARRDTRKLMAATGADEHLLKEAQGLIVGLEPKPGRRFTRAEANIIVPDVIVQKSGRNWKVVLN
PDVMPKLRINDLYAQALRSTRSPRGTAATESHTALSSRLQEARWFVKNIQQRFDTILRVSQAIVDRQKNFFTHGEIAMKP
LVLREIADELGLHESTISRVTTAKYMNTPFGTFELKYFFGSSLNTDAGGNASSTAVRALIKQLVAAEDPKKPLSDSQLSS
MLEEQGIQVARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=291227 DEH84_RS01185 WP_109034004.1 270092..271630(+) (rpoN/rpoN1) [Aquabacterium olei strain NBRC 110486]
ATGAAGCCATCCCTGCAGTTCCGGCTCTCCCAGCATCTGGCGCTCACGCCTCAGCTGCAGCAGTCCATTCGCCTGCTGCA
GCTGTCGACGCTGGAGCTGCATCAGGAAGTCGAGCAGATGCTCGAGATGAACCCCTTCCTCGAGCCCGAGGAAGAGTTCC
CCGCCGTGGACACGGCCGCCAGTCTCGAATTCGAGCGGCAGCGCAACGAGCGCACGAGCAGCGAAGAAGGCAGCAGCAGC
AGCGAAGCGAGCCCGAGCGAAGGGGAGGCCGGCGGCCTCGACACCGTCGAGATCGGTACCACCGAGCGCGACGACTGGGA
AAACGGCACCGAACGCGATGATTTCGACGGCATCCGCGAAACCCCCTCGCGCAACAACGACGGCGACGATGACTTCGATC
CGCTTGAGCGCAATGCCGTGGCCATCAGCCTGCAGGAGCACCTGCGTCAGCAGCTGCTGGGCACCCGCCTGAATGCGCAG
GACATGGCCGCGGTCGAGATCCTGATCGAGTCGCTCAATGAGGACGGTTACCTGGCGGATCCGCTCGACGAAATCGCCGC
CAGCCTCCTGCCCGAAGAGGCCGACGAAGACATGCGCGACGAACTGCTGTCGCGCCTGCGTTGCGCTCTGAGCTGGCTGC
AGCACATGGACCCGACCGGCGTCGGCGCCTCGTCGCTGTCCGAGTGCCTGGTGCTGCAACTCCGTACCCTGGAAGAAGAG
GCCGCGCGCGACCTCGCCATCGTCATCTGCCTGCATCACCTCGAGCTGCTCGCCCGACGCGACACGCGCAAGCTCATGGC
GGCCACTGGCGCCGACGAGCACCTGCTGAAGGAAGCCCAGGGCCTGATCGTCGGCCTCGAGCCGAAACCCGGCCGCCGCT
TCACGCGCGCCGAGGCCAACATCATCGTGCCCGATGTCATCGTGCAAAAGTCCGGCCGCAACTGGAAGGTCGTGCTCAAC
CCCGACGTGATGCCCAAGCTGCGCATCAACGACCTCTACGCCCAGGCGCTGCGTTCCACACGGTCGCCACGCGGCACTGC
CGCCACCGAGAGTCACACGGCGCTGAGTTCGCGGCTGCAGGAGGCACGCTGGTTCGTCAAGAACATCCAGCAGCGTTTCG
ACACCATCCTGCGCGTCTCGCAGGCCATCGTCGACCGCCAGAAGAACTTCTTCACCCATGGCGAGATCGCCATGAAGCCG
CTGGTGCTGCGCGAGATCGCCGACGAACTCGGTCTGCACGAATCCACCATCTCGCGGGTGACCACGGCCAAGTACATGAA
CACGCCGTTCGGCACGTTCGAACTCAAGTACTTCTTCGGCTCCTCGCTCAACACCGATGCCGGGGGCAACGCGTCCAGCA
CCGCGGTGCGCGCCCTCATCAAGCAACTCGTGGCCGCTGAAGATCCGAAGAAGCCGCTGTCCGACAGCCAGCTCTCCAGC
ATGCTCGAAGAGCAGGGCATCCAGGTTGCGCGTCGCACCGTGGCCAAGTACCGTGAAGCCCTGAAGATCGCACCCGCCAA
CCTGCGCAAGGCGCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-333)

Sigma-54, DNA binding domain (Sigma54_DBD)

(355-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8FMV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.728

100

0.561

Multiple sequence alignment