Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   DEH83_RS08600 Genome accession   NZ_CP029207
Coordinates   1696125..1697357 (+) Length   410 a.a.
NCBI ID   WP_003068865.1    Uniprot ID   A0AAD2SY77
Organism   Streptococcus constellatus strain TCV107     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1691125..1702357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS08570 (DEH83_08605) - 1691799..1692641 (+) 843 WP_255776599.1 phosphate ABC transporter ATPase -
  DEH83_RS08575 (DEH83_08610) - 1692680..1692943 (+) 264 WP_006267865.1 chorismate mutase -
  DEH83_RS08580 (DEH83_08615) - 1692959..1694176 (+) 1218 WP_255776600.1 chloride channel protein -
  DEH83_RS08585 (DEH83_08620) - 1694262..1695101 (+) 840 WP_003068859.1 thymidylate synthase -
  DEH83_RS08590 (DEH83_08625) - 1695387..1695899 (+) 513 WP_039677162.1 dihydrofolate reductase -
  DEH83_RS08595 (DEH83_08630) - 1695899..1696072 (+) 174 WP_003024903.1 hypothetical protein -
  DEH83_RS08600 (DEH83_08635) clpX 1696125..1697357 (+) 1233 WP_003068865.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  DEH83_RS08605 (DEH83_08640) yihA 1697370..1697957 (+) 588 WP_003068868.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DEH83_RS08610 (DEH83_08645) - 1698282..1698989 (+) 708 WP_003068871.1 glucosaminidase domain-containing protein -
  DEH83_RS08615 (DEH83_08650) - 1699165..1699962 (+) 798 WP_048800392.1 formate/nitrite transporter family protein -
  DEH83_RS08620 (DEH83_08655) - 1700175..1701911 (+) 1737 WP_255776602.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45677.14 Da        Isoelectric Point: 4.3940

>NTDB_id=291214 DEH83_RS08600 WP_003068865.1 1696125..1697357(+) (clpX) [Streptococcus constellatus strain TCV107]
MPTNRTSEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEDDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVTLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=291214 DEH83_RS08600 WP_003068865.1 1696125..1697357(+) (clpX) [Streptococcus constellatus strain TCV107]
ATGCCTACAAATCGTACGAGCGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGTCAAGAAGAAGTTCAAAAAATTAT
TGCAGGAAATAATGCATTTATTTGTAACGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TCTTGGCAGACTTGTCGGAAGTACCAAAACCACAAGAATTGCTTAACATTTTAAATCACTATGTAATAGGGCAAGATCGT
GCAAAGCGAGCGCTGGCTGTTGCTGTATACAATCACTATAAACGTATCAATTTTCACGATAATCGTGAAGAAGAGGATGA
TGTCGAATTACAAAAATCCAATATTCTTATGATTGGTCCAACCGGTTCTGGTAAGACTTTTCTTGCTCAAACTTTAGCGA
AAAGTCTAAATGTTCCCTTTGCGATTGCAGATGCGACAGCTTTGACGGAAGCTGGCTATGTCGGAGAAGATGTTGAAAAC
ATTCTCTTAAAACTCTTGCAAGCTGCAGATTTTAATATTGAGCGTGCAGAACGTGGCATTATCTATGTAGATGAGATTGA
CAAAATTGCAAAGAAAAGCGAAAACGTCTCTATTACTCGTGATGTGTCTGGTGAAGGCGTTCAGCAAGCTTTGCTTAAAA
TCATTGAAGGGACTGTAGCTAGTGTACCTCCTCAAGGCGGTCGCAAACATCCACAGCAAGAAATGATTCAAGTGGATACC
AAGAATATTCTTTTTATCGTTGGCGGTGCTTTTGACGGAATTGAAGAAATCGTCAAACAACGTCTAGGTGAAAAGATCAT
TGGTTTTGGTCAAAATAACAAAGCCATTGATGAAAATAGTTCTTATATGCAAGAAATTATTTCCGAAGATATTCAAAAAT
TTGGGCTTATTCCTGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTGACTGTTGATGATTTGGTGCGA
ATTCTCCGTGAGCCTAAGAATGCTTTAGTGAAACAATATCAAACGCTTCTTTCTTATGACGATGTTACATTAGAGTTTGA
TGATGATGCTCTCCAAGAGATTGCTAACAAAGCTATTGAACGCAAGACAGGTGCTCGTGGTTTGCGCTCGATTATCGAAG
AAACCATGATGGATGTCATGTTTGAAGTACCAAGTCAAGAAAATGTGAAGTTAGTGCGGATTACCAAGGAAGCAGTTGAT
GGAACAGATAAACCGATATTAGAAACAGCTTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.458

98.049

0.573

Multiple sequence alignment