Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   DEH83_RS06775 Genome accession   NZ_CP029207
Coordinates   1331351..1332040 (+) Length   229 a.a.
NCBI ID   WP_125442754.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326351..1337040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06755 (DEH83_06765) htpX 1326878..1327774 (+) 897 WP_003068114.1 zinc metalloprotease HtpX -
  DEH83_RS06760 (DEH83_06770) - 1327843..1329102 (-) 1260 WP_255777243.1 transporter -
  DEH83_RS06765 (DEH83_06775) - 1329290..1329826 (+) 537 WP_039677365.1 DUF177 domain-containing protein -
  DEH83_RS06770 (DEH83_06780) gndA 1329918..1331342 (+) 1425 WP_003071834.1 NADP-dependent phosphogluconate dehydrogenase -
  DEH83_RS06775 (DEH83_06785) covR 1331351..1332040 (+) 690 WP_125442754.1 response regulator transcription factor Regulator
  DEH83_RS06780 (DEH83_06790) - 1332251..1334440 (+) 2190 WP_048800585.1 PTS transporter subunit IIBC -
  DEH83_RS06785 (DEH83_06795) - 1334457..1335272 (+) 816 WP_255776453.1 endonuclease/exonuclease/phosphatase family protein -
  DEH83_RS06790 (DEH83_06800) nrdR 1335455..1335928 (+) 474 WP_003068126.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26621.68 Da        Isoelectric Point: 6.1345

>NTDB_id=291206 DEH83_RS06775 WP_125442754.1 1331351..1332040(+) (covR) [Streptococcus constellatus strain TCV107]
MGKRILLVENEKKLAQFISLELQNEGYRVDLFETGKDALTSARANQYDLFLLNFMLEDMTGTEFAEQLSLIKPASVIIVL
DNRDIILKYTEEIQRFAVSYMIEPFIVMDLVEKISAIFRGRDFIDHHCSQMKVSTSYRNLRIDVQNHTVYRGNEIISLTR
REYDLLATLMGSHQALSREQLLERVWKYEGAVETNVVDVYIRYLRSKLDIAGQKSYIKTVRGVGYAMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=291206 DEH83_RS06775 WP_125442754.1 1331351..1332040(+) (covR) [Streptococcus constellatus strain TCV107]
ATGGGGAAGCGGATTTTATTAGTTGAGAATGAAAAAAAATTAGCACAATTTATTAGCTTAGAGTTGCAAAATGAAGGTTA
TCGAGTGGATCTTTTTGAAACGGGAAAAGATGCTTTAACATCTGCGAGAGCTAATCAATACGATTTATTCCTGTTGAATT
TTATGCTTGAAGATATGACAGGAACGGAGTTTGCTGAGCAATTAAGTTTGATAAAGCCTGCTTCAGTCATTATTGTATTG
GATAATCGTGATATTATTTTAAAATATACTGAGGAAATCCAACGTTTTGCTGTTAGTTATATGATAGAGCCTTTCATTGT
GATGGACTTGGTCGAAAAAATTTCTGCTATTTTTCGTGGGCGTGATTTTATCGATCATCATTGTAGTCAGATGAAAGTTT
CAACATCTTATCGGAATCTTCGCATTGACGTGCAAAATCATACTGTATATCGAGGGAATGAAATAATTTCCTTGACTAGA
AGAGAGTATGATTTGTTAGCAACGCTGATGGGCAGTCATCAGGCTTTAAGCCGTGAACAGCTGTTAGAGCGCGTTTGGAA
ATACGAAGGAGCAGTCGAAACAAATGTTGTTGATGTCTATATTCGTTATCTTCGTAGTAAACTTGATATAGCAGGGCAGA
AAAGTTACATAAAAACCGTGCGTGGTGTTGGCTATGCTATGCAAGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-227)

Response regulator receiver domain (Response_reg)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.261

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.175

99.563

0.45

Multiple sequence alignment