Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | DDU33_RS05105 | Genome accession | NZ_CP029206 |
| Coordinates | 1010577..1011119 (-) | Length | 180 a.a. |
| NCBI ID | WP_108923517.1 | Uniprot ID | A0A2U8FIV9 |
| Organism | Actinobacillus porcitonsillarum strain 9953L55 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1005577..1016119
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDU33_RS05090 (DDU33_05090) | - | 1005969..1006598 (+) | 630 | WP_108923513.1 | MBL fold metallo-hydrolase | - |
| DDU33_RS05095 (DDU33_05095) | argH | 1006776..1008152 (+) | 1377 | WP_005820308.1 | argininosuccinate lyase | - |
| DDU33_RS05100 (DDU33_05100) | - | 1008227..1010563 (-) | 2337 | WP_108923515.1 | Tex family protein | - |
| DDU33_RS05105 (DDU33_05105) | pilF | 1010577..1011119 (-) | 543 | WP_108923517.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| DDU33_RS05110 (DDU33_05110) | - | 1011144..1012304 (-) | 1161 | WP_005820305.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| DDU33_RS05115 (DDU33_05115) | cgtA | 1012598..1013773 (-) | 1176 | WP_005818887.1 | Obg family GTPase CgtA | - |
| DDU33_RS05120 (DDU33_05120) | argS | 1013978..1015705 (-) | 1728 | WP_005818885.1 | arginine--tRNA ligase | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 20605.27 Da Isoelectric Point: 6.3288
>NTDB_id=291140 DDU33_RS05105 WP_108923517.1 1010577..1011119(-) (pilF) [Actinobacillus porcitonsillarum strain 9953L55]
MPFAKLFNFFTACLVLFLVGCSSTVEPISEFNRSEAVKARINLALAYLDHHDFPKAKENIDRALSHDPKDYLPYSVLAYY
YQQTGEPQQAEKAYLDALTLSHNRPDVLNNYGTFLCKQGQFQQAYQQFEKAVSSEQPYYHQADSLENIILCAKSESNLAK
VQEAINQLEKLDKVRANQLR
MPFAKLFNFFTACLVLFLVGCSSTVEPISEFNRSEAVKARINLALAYLDHHDFPKAKENIDRALSHDPKDYLPYSVLAYY
YQQTGEPQQAEKAYLDALTLSHNRPDVLNNYGTFLCKQGQFQQAYQQFEKAVSSEQPYYHQADSLENIILCAKSESNLAK
VQEAINQLEKLDKVRANQLR
Nucleotide
Download Length: 543 bp
>NTDB_id=291140 DDU33_RS05105 WP_108923517.1 1010577..1011119(-) (pilF) [Actinobacillus porcitonsillarum strain 9953L55]
ATGCCATTTGCAAAATTATTCAATTTTTTTACCGCTTGTTTAGTCTTGTTTCTTGTCGGCTGTTCTTCTACGGTAGAGCC
AATTTCTGAATTTAACCGTTCAGAAGCGGTTAAAGCGAGGATCAACCTCGCTTTAGCTTATCTTGATCACCACGATTTCC
CTAAAGCCAAAGAGAATATTGACCGTGCGTTAAGCCACGATCCGAAAGACTACCTTCCTTACTCTGTTCTCGCCTACTAT
TATCAACAAACAGGCGAACCTCAACAGGCTGAAAAAGCTTACCTTGATGCTTTAACCTTAAGCCATAATCGTCCTGATGT
ACTCAATAATTACGGCACTTTTTTGTGTAAACAAGGTCAATTTCAGCAGGCATATCAACAATTTGAAAAAGCAGTAAGTA
GCGAACAGCCTTATTATCATCAAGCAGATAGCCTCGAAAATATTATTCTTTGTGCTAAATCTGAATCCAATCTTGCGAAA
GTACAGGAAGCAATAAATCAACTGGAAAAATTAGATAAGGTCAGAGCGAACCAACTTCGTTAA
ATGCCATTTGCAAAATTATTCAATTTTTTTACCGCTTGTTTAGTCTTGTTTCTTGTCGGCTGTTCTTCTACGGTAGAGCC
AATTTCTGAATTTAACCGTTCAGAAGCGGTTAAAGCGAGGATCAACCTCGCTTTAGCTTATCTTGATCACCACGATTTCC
CTAAAGCCAAAGAGAATATTGACCGTGCGTTAAGCCACGATCCGAAAGACTACCTTCCTTACTCTGTTCTCGCCTACTAT
TATCAACAAACAGGCGAACCTCAACAGGCTGAAAAAGCTTACCTTGATGCTTTAACCTTAAGCCATAATCGTCCTGATGT
ACTCAATAATTACGGCACTTTTTTGTGTAAACAAGGTCAATTTCAGCAGGCATATCAACAATTTGAAAAAGCAGTAAGTA
GCGAACAGCCTTATTATCATCAAGCAGATAGCCTCGAAAATATTATTCTTTGTGCTAAATCTGAATCCAATCTTGCGAAA
GTACAGGAAGCAATAAATCAACTGGAAAAATTAGATAAGGTCAGAGCGAACCAACTTCGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
62.567 |
100 |
0.65 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
44.253 |
96.667 |
0.428 |