Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   DDU33_RS03880 Genome accession   NZ_CP029206
Coordinates   757161..757559 (-) Length   132 a.a.
NCBI ID   WP_005821299.1    Uniprot ID   -
Organism   Actinobacillus porcitonsillarum strain 9953L55     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 752161..762559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDU33_RS03865 (DDU33_03865) ltrA 754166..755890 (+) 1725 WP_108923275.1 group II intron reverse transcriptase/maturase -
  DDU33_RS03875 (DDU33_03875) asd 756134..757024 (-) 891 WP_005821297.1 archaetidylserine decarboxylase -
  DDU33_RS03880 (DDU33_03880) comEA/comE1 757161..757559 (-) 399 WP_005821299.1 ComEA family DNA-binding protein Machinery gene
  DDU33_RS03885 (DDU33_03885) - 757842..759254 (+) 1413 WP_005821301.1 LysM-like peptidoglycan-binding domain-containing protein -
  DDU33_RS03890 (DDU33_03890) - 759306..759755 (+) 450 WP_005821303.1 MliC family protein -
  DDU33_RS03895 (DDU33_03895) waaF 759784..760821 (+) 1038 WP_108923279.1 lipopolysaccharide heptosyltransferase II -
  DDU33_RS03900 (DDU33_03900) - 761023..762534 (+) 1512 WP_081451208.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14081.11 Da        Isoelectric Point: 9.7691

>NTDB_id=291138 DDU33_RS03880 WP_005821299.1 757161..757559(-) (comEA/comE1) [Actinobacillus porcitonsillarum strain 9953L55]
MKKMNVLAITLGLLSGSVFAQQPALVEQPLQTQTQEVVQQPAVQQATNTVVSTPASTTQQVQQVVNPNLVNINVASAAEI
QDKLVGIGAKKAQAIVDYRTKNGAFSSIEQLKEVSGIGSATLDKNRERIVLQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=291138 DDU33_RS03880 WP_005821299.1 757161..757559(-) (comEA/comE1) [Actinobacillus porcitonsillarum strain 9953L55]
ATGAAAAAAATGAACGTACTTGCCATTACTTTAGGCCTGTTAAGTGGCTCGGTTTTTGCGCAACAACCAGCATTAGTTGA
ACAACCATTGCAAACACAAACTCAAGAGGTTGTGCAACAACCTGCCGTTCAGCAAGCTACAAATACTGTAGTTTCTACAC
CAGCTAGCACTACTCAGCAAGTTCAACAAGTCGTCAATCCAAATCTTGTCAACATCAATGTTGCATCAGCGGCAGAAATT
CAAGATAAATTAGTTGGAATTGGAGCAAAAAAAGCACAAGCCATTGTCGATTACCGCACTAAAAATGGTGCATTCTCTAG
CATTGAGCAACTAAAAGAAGTGTCTGGTATTGGTAGTGCAACACTAGATAAAAATCGTGAACGTATTGTTTTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(65-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

49.254

100

0.5
  comE1/comEA Haemophilus influenzae Rd KW20

52.688

70.455

0.371

Multiple sequence alignment