Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A1D74_RS16635 Genome accession   NZ_CP034794
Coordinates   3194364..3195101 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 06-3462     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3189364..3200101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D74_RS16620 clpC 3189818..3192391 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  A1D74_RS16625 yfiH 3192521..3193252 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  A1D74_RS16630 rluD 3193249..3194229 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A1D74_RS16635 comL 3194364..3195101 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A1D74_RS16640 raiA 3195372..3195713 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A1D74_RS16645 pheL 3195817..3195864 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A1D74_RS16650 pheA 3195963..3197123 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  A1D74_RS16655 tyrA 3197166..3198287 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A1D74_RS16660 aroF 3198298..3199368 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A1D74_RS16665 yfiL 3199578..3199943 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=290918 A1D74_RS16635 WP_000197686.1 3194364..3195101(+) (comL) [Escherichia coli strain 06-3462]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=290918 A1D74_RS16635 WP_000197686.1 3194364..3195101(+) (comL) [Escherichia coli strain 06-3462]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376