Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DD555_RS11935 Genome accession   NZ_CP029166
Coordinates   2256597..2256992 (-) Length   131 a.a.
NCBI ID   WP_084927578.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SVH7513     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2251597..2261992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD555_RS11910 (DD555_11910) thiE 2252197..2252838 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  DD555_RS11915 (DD555_11915) thiM 2252840..2253631 (-) 792 WP_001108476.1 hydroxyethylthiazole kinase -
  DD555_RS11920 (DD555_11920) thiD 2253615..2254445 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DD555_RS11925 (DD555_11925) tenA 2254438..2255127 (-) 690 WP_000396075.1 thiaminase II -
  DD555_RS11930 (DD555_11930) sceD 2255513..2256208 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  DD555_RS11935 (DD555_11935) ssb 2256597..2256992 (-) 396 WP_084927578.1 single-stranded DNA-binding protein Machinery gene
  DD555_RS11940 (DD555_11940) - 2257186..2257626 (+) 441 WP_000846746.1 YwpF-like family protein -
  DD555_RS11945 (DD555_11945) fabZ 2257684..2258124 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DD555_RS11950 (DD555_11950) murA 2258158..2259423 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DD555_RS11955 (DD555_11955) - 2259534..2259767 (-) 234 WP_000384523.1 DUF1146 family protein -
  DD555_RS11960 (DD555_11960) - 2259899..2259991 (-) 93 WP_001790611.1 hypothetical protein -
  DD555_RS11965 (DD555_11965) - 2260329..2260733 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15014.04 Da        Isoelectric Point: 5.6824

>NTDB_id=290894 DD555_RS11935 WP_084927578.1 2256597..2256992(-) (ssb) [Staphylococcus aureus strain SVH7513]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYAETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=290894 DD555_RS11935 WP_084927578.1 2256597..2256992(-) (ssb) [Staphylococcus aureus strain SVH7513]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGCTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment