Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SGO_RS08105 Genome accession   NC_009785
Coordinates   1720832..1721542 (+) Length   236 a.a.
NCBI ID   WP_012130712.1    Uniprot ID   A8AYS1
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715832..1726542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS08095 (SGO_1652) treC 1716882..1718507 (-) 1626 WP_012130710.1 alpha,alpha-phosphotrehalase -
  SGO_RS08100 (SGO_1653) treP 1718643..1720652 (-) 2010 WP_012130711.1 PTS system trehalose-specific EIIBC component -
  SGO_RS08105 (SGO_1654) treR 1720832..1721542 (+) 711 WP_012130712.1 trehalose operon repressor Regulator
  SGO_RS08110 (SGO_1655) - 1721909..1723249 (-) 1341 WP_012130713.1 hemolysin family protein -
  SGO_RS08115 (SGO_1656) - 1723341..1724987 (-) 1647 WP_012130714.1 phosphoenolpyruvate carboxykinase (ATP) -
  SGO_RS08120 (SGO_1657) - 1725087..1726211 (-) 1125 WP_012130715.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27654.80 Da        Isoelectric Point: 9.3050

>NTDB_id=29084 SGO_RS08105 WP_012130712.1 1720832..1721542(+) (treR) [Streptococcus gordonii str. Challis substr. CH1]
MKKYQQLFKLIEQDILSEKYPVGEFLPSENELTQIYKVSRDTVRKALEQLQKEGLIQKFKGQGSKIVKQEHINFPISNLT
SYQELVLQNKLDSKTNVISLEKITVDKKLAKLTGFPEYRLVWRIIRQRVVDQVASVLDIDYLDKELVPTMTREIAEHSIY
HFIENDLGLSIDYAKKEITIDHATSRDKILLDIERENHVVSVKSQVYLANGQQFQFTDSRHKLDKFRFVDFAKRHG

Nucleotide


Download         Length: 711 bp        

>NTDB_id=29084 SGO_RS08105 WP_012130712.1 1720832..1721542(+) (treR) [Streptococcus gordonii str. Challis substr. CH1]
ATGAAGAAATACCAACAATTATTCAAACTAATCGAGCAAGATATTCTGAGCGAGAAATACCCCGTTGGTGAATTTTTGCC
AAGCGAGAATGAATTAACTCAGATTTATAAAGTCAGCCGTGATACTGTCCGAAAAGCTCTGGAGCAACTTCAAAAAGAAG
GATTAATCCAAAAATTTAAGGGACAAGGATCCAAAATCGTCAAACAGGAACACATCAATTTTCCAATCTCCAATCTGACT
AGCTACCAGGAACTCGTCCTACAAAATAAACTAGACTCTAAAACCAATGTCATCAGCCTAGAAAAGATAACCGTAGATAA
AAAACTTGCTAAGCTAACTGGTTTCCCGGAATATCGCTTGGTTTGGCGAATCATTCGACAAAGAGTTGTTGATCAAGTTG
CTTCTGTCCTTGATATTGATTATTTAGATAAAGAGCTTGTTCCTACGATGACGAGAGAAATTGCAGAGCATTCTATCTAT
CATTTCATTGAAAACGATCTTGGACTTAGCATCGACTATGCTAAGAAGGAAATCACCATTGATCATGCGACCAGTCGGGA
TAAAATTTTGCTCGATATTGAGAGAGAAAACCATGTCGTTTCCGTCAAATCTCAGGTTTATTTAGCGAACGGGCAACAAT
TTCAGTTCACAGACAGCAGACACAAACTCGACAAATTTCGCTTTGTTGATTTTGCCAAAAGGCACGGTTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AYS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.576

0.644

Multiple sequence alignment