Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DR788_RS01985 Genome accession   NZ_CP034792
Coordinates   382505..383242 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2009C-3378     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377505..388242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR788_RS01955 yfiL 377663..378028 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  DR788_RS01960 aroF 378238..379308 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DR788_RS01965 tyrA 379319..380440 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DR788_RS01970 pheA 380483..381643 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  DR788_RS01975 pheL 381742..381789 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DR788_RS01980 raiA 381893..382234 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DR788_RS01985 comL 382505..383242 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DR788_RS01990 rluD 383377..384357 (+) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DR788_RS01995 yfiH 384354..385085 (+) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  DR788_RS02000 clpC 385215..387788 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=290813 DR788_RS01985 WP_000197686.1 382505..383242(-) (comL) [Escherichia coli strain 2009C-3378]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=290813 DR788_RS01985 WP_000197686.1 382505..383242(-) (comL) [Escherichia coli strain 2009C-3378]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376