Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   C3363_RS08255 Genome accession   NZ_CP029150
Coordinates   1679152..1679493 (+) Length   113 a.a.
NCBI ID   WP_021114059.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GZ20170512     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1679817..1680356 1679152..1679493 flank 324


Gene organization within MGE regions


Location: 1679152..1680356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3363_RS08255 (C3363_08300) comEA/comE1 1679152..1679493 (+) 342 WP_021114059.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12505.33 Da        Isoelectric Point: 9.5403

>NTDB_id=290765 C3363_RS08255 WP_021114059.1 1679152..1679493(+) (comEA/comE1) [Glaesserella parasuis strain GZ20170512]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEHTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGEKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=290765 C3363_RS08255 WP_021114059.1 1679152..1679493(+) (comEA/comE1) [Glaesserella parasuis strain GZ20170512]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACATACACCGGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTCGGTATTGGAGAGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

98.23

100

0.982
  comE1/comEA Haemophilus influenzae Rd KW20

58.261

100

0.593

Multiple sequence alignment