Detailed information NTG0029057

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECS88_RS16470
• Genome accession: NC_011742
• Coordinates: 2960633..2961625 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli S88
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2955633..2966625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECS88_RS16450 (ECS88_3006)	ygbM	2956264..2957040 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
ECS88_RS16455 (ECS88_3007)	ygbN	2957129..2958493 (+)	1365	WP_000104443.1	GntP family transporter	-
ECS88_RS16460 (ECS88_3008)	-	2958636..2959679 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
ECS88_RS16465 (ECS88_3009)	-	2959904..2960455 (+)	552	WP_001179442.1	flavodoxin family protein	-
ECS88_RS16470 (ECS88_3010)	rpoS	2960633..2961625 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECS88_RS16475 (ECS88_3011)	nlpD	2961688..2962782 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ECS88_RS16480 (ECS88_3013)	pcm	2962967..2963593 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
ECS88_RS16485 (ECS88_3014)	surE	2963587..2964348 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECS88_RS16490 (ECS88_3015)	truD	2964329..2965378 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
ECS88_RS16495 (ECS88_3016)	ispF	2965375..2965854 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECS88_RS16500 (ECS88_3017)	ispD	2965854..2966564 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=29057 ECS88_RS16470 WP_000081550.1 2960633..2961625(-) (rpoS) [Escherichia coli S88]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=29057 ECS88_RS16470 WP_000081550.1 2960633..2961625(-) (rpoS) [Escherichia coli S88]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715