Detailed information NTG0290540

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: EKO22_RS06485
• Genome accession: NZ_CP034671
• Coordinates: 1324058..1325290 (-)
• Length: 410 a.a.
• NCBI ID: WP_208678882.1
• Uniprot ID: -
• Organism: Synechococcus elongatus PCC 11802
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1319058..1330290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EKO22_RS06465 (EKO22_06465)	rfbC	1320260..1320811 (-)	552	WP_208678885.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
EKO22_RS06470 (EKO22_06470)	dusA	1321244..1322257 (-)	1014	WP_208679095.1	tRNA dihydrouridine(20/20a) synthase DusA	-
EKO22_RS06475 (EKO22_06475)	-	1322284..1323516 (+)	1233	WP_208678884.1	NAD(P)/FAD-dependent oxidoreductase	-
EKO22_RS06480 (EKO22_06480)	-	1323496..1324053 (-)	558	WP_208678883.1	hypothetical protein	-
EKO22_RS06485 (EKO22_06485)	pilC	1324058..1325290 (-)	1233	WP_208678882.1	type II secretion system F family protein	Machinery gene
EKO22_RS06490 (EKO22_06490)	pilT	1325314..1326402 (-)	1089	WP_208678881.1	type IV pilus twitching motility protein PilT	Machinery gene
EKO22_RS06495 (EKO22_06495)	pilB/pilB1	1326474..1328474 (-)	2001	WP_208678880.1	GspE/PulE family protein	Machinery gene
EKO22_RS06500 (EKO22_06500)	grpE	1328751..1329374 (+)	624	WP_338438663.1	nucleotide exchange factor GrpE	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45290.28 Da
• Isoelectric Point: 5.1171

>NTDB_id=290540 EKO22_RS06485 WP_208678882.1 1324058..1325290(-) (pilC) [Synechococcus elongatus PCC 11802]
MPTFVAQVRDSHGAIRELRIRSGNVRQARVELRQMGLVIQTIDESVGFSLANLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKALRQINLDVQEGLNLSDSMRKFPNIFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPDFTLFLLSISETLRTPIFWGLFLVFLFGSI
FVFKQYYATPLGCLSVDSMILRLPILGEMIQKAATARFCRTFGSLTRAGVPIMTALEIVRDTAGNQAIAQSIDAARMEVQ
TGGMMSVALARYRIFPMMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=290540 EKO22_RS06485 WP_208678882.1 1324058..1325290(-) (pilC) [Synechococcus elongatus PCC 11802]
ATGCCAACTTTTGTTGCTCAAGTTCGTGACAGTCATGGTGCTATCCGTGAACTGCGCATTCGATCTGGAAACGTTCGTCA
AGCGCGTGTTGAGCTGCGCCAAATGGGCTTGGTTATCCAAACCATTGATGAGTCAGTCGGATTCTCTCTCGCTAATCTCA
GTAGCTTCAATTTGGAAGAGGCGACAAGTAAAGTTACGGTAAAAGATATGGCTTTGTTTTCTCGCCAGCTATCTTCACTG
GTAGATGCAGGTGTTCCGATCGTCAGAGCCTTAGGACTGCTAACAGAGCAAACCCGTAATCCTAAGCTTAGAAAAGCACT
CAGACAGATTAATCTTGATGTTCAAGAAGGTCTGAATCTTTCAGATTCAATGCGTAAGTTTCCTAATATCTTTGATGGTT
TATACGTTGCTATGATTCAAGCTGGCGAAACGGGGGGGGTGTTGGATGATGTTTTAAACCGGCTTTCTAAATTACTGGAA
GATATGTCTCGGCTTCGCAACCAGATGAAATCGGCGATGACCTATCCAATGGCAGTTTTTGTTATTGCCATTCTTGTTTT
TCTGGGTATGACAATTTTTATCATTCCTACATTCGCAGGAATTTTTGAAGATCAAGGTGCAGAGCTTCCAGACTTTACGT
TATTTCTATTATCGATTAGTGAGACGTTAAGGACACCAATTTTTTGGGGACTGTTCCTGGTCTTTTTATTTGGTTCTATT
TTTGTCTTTAAACAGTATTATGCAACTCCACTTGGGTGTCTCAGTGTAGATAGTATGATTTTGCGTCTGCCTATCTTGGG
AGAAATGATTCAGAAGGCAGCAACAGCTCGCTTTTGTCGAACTTTTGGTTCGCTGACACGGGCAGGGGTTCCTATCATGA
CTGCACTCGAAATTGTACGAGATACCGCAGGTAATCAAGCGATCGCCCAATCAATTGATGCTGCCCGAATGGAAGTGCAA
ACTGGTGGGATGATGAGCGTGGCTCTAGCACGCTATCGAATCTTTCCAATGATGGCCTTGAGTATGATTACGATTGGAGA
GGAGACGGGTGAGCTAGACACAATGGTCAATAAAGTTGCCGACTTTTATGAAGATGAAGTGGAACAAGCTGTTAAGGGTC
TGACAAGTCTGTTGGAGCCAATTATGATTGTTCTAGTCGGCGGTATCGTTGGCTCAATCCTGCTGGCGATGTATTTGCCA
ATGTTTAGCATTTTCGATCAGATCAAAGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	41.728	98.78	0.412