Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CSC23_RS06835 Genome accession   NZ_CP029111
Coordinates   1167059..1167688 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR436     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162059..1172688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC23_RS06820 (CSC23_1185) helD 1162301..1164355 (-) 2055 WP_000420536.1 DNA helicase IV -
  CSC23_RS06825 (CSC23_1186) yccF 1164478..1164924 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CSC23_RS06830 (CSC23_1187) yccS 1164934..1167096 (+) 2163 WP_000875020.1 YccS family putative transporter -
  CSC23_RS06835 (CSC23_1188) sxy/tfoX 1167059..1167688 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CSC23_RS06840 (CSC23_1189) sulA 1167907..1168416 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CSC23_RS06850 (CSC23_1190) ompA 1168773..1169813 (+) 1041 WP_000750416.1 porin OmpA -
  CSC23_RS06855 (CSC23_1191) matP 1169889..1170341 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CSC23_RS06860 (CSC23_1192) ycbZ 1170527..1172287 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=290542 CSC23_RS06835 WP_000839153.1 1167059..1167688(-) (sxy/tfoX) [Escherichia coli strain AR436]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=290542 CSC23_RS06835 WP_000839153.1 1167059..1167688(-) (sxy/tfoX) [Escherichia coli strain AR436]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment