Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ELB75_RS07275 Genome accession   NZ_CP034670
Coordinates   1440617..1441426 (-) Length   269 a.a.
NCBI ID   WP_126983355.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1435617..1446426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS07250 (ELB75_07250) - 1436383..1437249 (+) 867 WP_126984238.1 ATP-binding protein -
  ELB75_RS07255 (ELB75_07255) - 1437469..1438245 (-) 777 WP_126983352.1 ferredoxin--NADP reductase -
  ELB75_RS07260 (ELB75_07260) - 1438242..1439090 (-) 849 WP_126983353.1 J domain-containing protein -
  ELB75_RS07265 (ELB75_07265) - 1439255..1440050 (+) 796 WP_126982325.1 IS5 family transposase -
  ELB75_RS07270 (ELB75_07270) - 1440097..1440531 (-) 435 WP_126983354.1 DUF4124 domain-containing protein -
  ELB75_RS07275 (ELB75_07275) comL 1440617..1441426 (-) 810 WP_126983355.1 outer membrane protein assembly factor BamD Machinery gene
  ELB75_RS07280 (ELB75_07280) rluD 1441425..1442543 (+) 1119 WP_126983356.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ELB75_RS07285 (ELB75_07285) thiL 1442785..1443771 (+) 987 WP_126984239.1 thiamine-phosphate kinase -
  ELB75_RS07290 (ELB75_07290) - 1443764..1444267 (+) 504 WP_126983357.1 phosphatidylglycerophosphatase A -
  ELB75_RS12875 - 1444476..1444757 (+) 282 WP_241236049.1 DUF4279 domain-containing protein -
  ELB75_RS07305 (ELB75_07305) - 1444953..1445540 (+) 588 WP_126983359.1 DUF1043 family protein -
  ELB75_RS07310 (ELB75_07310) - 1445617..1446249 (-) 633 WP_126983360.1 DUF533 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31441.60 Da        Isoelectric Point: 9.3174

>NTDB_id=290496 ELB75_RS07275 WP_126983355.1 1440617..1441426(-) (comL) [Eikenella corrodens strain KCOM 3110]
MKKILLVTGLAVMLSACSSTSTTAVSQDAQITQDWSVDKLYAEAHEEMESRNYSRSVRLYEILRARFPNTRQAVQSRLDT
AYVYYKDEQQPQALAHVEQFLKLYPNHPNTDYALYLKGLIVLNQDKSIFNKLASQDWSDRDPKANREAYQVFNELITRFP
DSKYANDAREKMTRLVDALGGNEMAIARYYMQRGAYLAAANRAQGIVSRYQNTRYMEEALAIMMTAYARLEKPELSNDTR
RVLARNFPQSPYLQKEWQPNDIPWWRYWK

Nucleotide


Download         Length: 810 bp        

>NTDB_id=290496 ELB75_RS07275 WP_126983355.1 1440617..1441426(-) (comL) [Eikenella corrodens strain KCOM 3110]
ATGAAAAAGATTCTTTTAGTTACCGGCCTGGCAGTGATGCTGTCGGCCTGCTCCAGCACTTCAACCACCGCTGTGAGCCA
AGATGCCCAGATTACGCAGGATTGGTCGGTAGATAAGCTGTATGCCGAAGCGCACGAGGAAATGGAGAGCCGCAATTATA
GCCGTTCGGTGCGCTTATATGAAATTTTGCGGGCGCGTTTCCCCAACACCCGCCAAGCGGTGCAGTCGCGGCTGGATACG
GCTTATGTGTATTACAAAGACGAACAGCAGCCGCAGGCCTTGGCGCATGTGGAGCAGTTTTTGAAGCTGTATCCCAACCA
CCCGAATACCGATTATGCGCTGTATCTGAAGGGCTTGATTGTGCTCAATCAAGACAAATCCATCTTCAACAAGCTGGCCT
CGCAGGATTGGTCCGACCGCGACCCGAAAGCAAACCGCGAAGCCTATCAGGTGTTTAACGAGCTCATCACCCGCTTCCCC
GATAGCAAATACGCCAACGACGCGCGCGAGAAAATGACGCGCCTGGTGGATGCGCTGGGCGGCAACGAAATGGCCATCGC
CCGCTACTATATGCAGCGCGGCGCTTACTTGGCCGCCGCCAACCGTGCGCAGGGGATTGTGAGCCGCTATCAGAATACGC
GCTATATGGAAGAGGCGCTGGCGATTATGATGACCGCCTACGCCCGTTTGGAAAAACCGGAACTGAGCAACGACACCCGC
CGTGTGCTGGCGCGAAACTTCCCGCAAAGCCCCTATTTGCAGAAAGAATGGCAGCCAAATGATATTCCGTGGTGGCGCTA
TTGGAAGTAG

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(36-240)

Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1)

(1-18)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

65.299

99.628

0.651
  comL Neisseria meningitidis MC58

64.925

99.628

0.647

Multiple sequence alignment