Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA2   Type   Machinery gene
Locus tag   ELB75_RS06320 Genome accession   NZ_CP034670
Coordinates   1263779..1264447 (-) Length   222 a.a.
NCBI ID   WP_126983200.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1258779..1269447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS06295 (ELB75_06295) - 1258856..1259659 (+) 804 WP_126983195.1 autotransporter domain-containing protein -
  ELB75_RS12480 - 1259830..1260042 (+) 213 WP_164726825.1 hypothetical protein -
  ELB75_RS06305 (ELB75_06305) - 1260387..1261580 (-) 1194 WP_126983197.1 amino acid aminotransferase -
  ELB75_RS06310 (ELB75_06310) - 1261755..1262585 (-) 831 WP_126983198.1 alpha/beta hydrolase -
  ELB75_RS06315 (ELB75_06315) - 1262778..1263599 (-) 822 WP_126983199.1 undecaprenyl-diphosphate phosphatase -
  ELB75_RS06320 (ELB75_06320) dsbA2 1263779..1264447 (-) 669 WP_126983200.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  ELB75_RS06325 (ELB75_06325) - 1264487..1265278 (-) 792 WP_126983201.1 SPOR domain-containing protein -
  ELB75_RS06330 (ELB75_06330) comM 1265491..1266987 (-) 1497 WP_126983202.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ELB75_RS06335 (ELB75_06335) - 1266998..1267264 (-) 267 WP_126983203.1 accessory factor UbiK family protein -
  ELB75_RS06340 (ELB75_06340) - 1267379..1267834 (-) 456 WP_126983204.1 DUF4149 domain-containing protein -
  ELB75_RS06345 (ELB75_06345) ttcA 1267984..1268937 (+) 954 WP_126983205.1 tRNA 2-thiocytidine(32) synthetase TtcA -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24353.02 Da        Isoelectric Point: 10.1012

>NTDB_id=290490 ELB75_RS06320 WP_126983200.1 1263779..1264447(-) (dsbA2) [Eikenella corrodens strain KCOM 3110]
MKLKALLFSALTVFAVTTAQAKAVEGTDYIVRSNVIKPVQSDKIEVTEFFGYFCIHCQHLEPIIEQQSKRFASDTVLRQE
HVVWQPAHQTLARLAAAVKSTGLSRQANQAIFKALMDGVVTDETSLKAWIQQQPYGSRLLAAYNNPQAAAAAQTMQQQTV
TYNITKTPVVVVGGKYELTNSQNMAVLQELIEKVRAERGMPAPAPRAVVRSRGAAIAGQANR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=290490 ELB75_RS06320 WP_126983200.1 1263779..1264447(-) (dsbA2) [Eikenella corrodens strain KCOM 3110]
ATGAAACTGAAAGCCCTACTCTTCTCCGCCCTCACCGTCTTCGCCGTTACCACCGCCCAAGCCAAAGCTGTGGAAGGCAC
CGACTACATTGTGCGCAGCAATGTGATCAAACCCGTACAGTCCGACAAAATCGAAGTAACCGAATTCTTCGGCTATTTCT
GCATCCACTGCCAACACCTCGAACCGATTATCGAGCAGCAAAGCAAACGCTTCGCCTCCGACACCGTATTGCGCCAAGAG
CACGTGGTGTGGCAGCCTGCCCACCAAACCCTTGCCCGCCTGGCCGCCGCCGTGAAATCCACCGGCCTGTCCCGCCAGGC
CAACCAGGCCATTTTCAAAGCGCTGATGGACGGCGTCGTAACCGACGAAACCAGCCTGAAAGCCTGGATTCAGCAGCAGC
CCTACGGCAGCCGCCTGCTCGCCGCCTACAACAACCCGCAGGCCGCCGCCGCTGCCCAAACCATGCAGCAGCAAACCGTT
ACCTACAACATCACCAAAACCCCGGTGGTGGTGGTGGGCGGCAAATACGAGCTCACCAACTCCCAAAACATGGCCGTGCT
GCAGGAGCTGATTGAAAAAGTCCGTGCCGAACGCGGTATGCCCGCTCCTGCCCCGCGCGCCGTAGTGCGCAGCCGCGGCG
CAGCCATCGCCGGCCAAGCCAACCGCTAA

Domains

Predicted by InterProScan.

Thioredoxin (Thioredoxin_4)

(41-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA2 Neisseria meningitidis MC58

44.022

82.883

0.365
  dsbA1 Neisseria meningitidis MC58

43.478

82.883

0.36