Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VIBHAR_RS23255 Genome accession   NC_009784
Coordinates   1250747..1252048 (+) Length   433 a.a.
NCBI ID   WP_012129594.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245747..1257048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS23220 (VIBHAR_06079) - 1245918..1246349 (-) 432 Protein_1150 DUF2913 family protein -
  VIBHAR_RS23235 (VIBHAR_06082) - 1247611..1247964 (-) 354 Protein_1152 helix-turn-helix domain-containing protein -
  VIBHAR_RS23250 (VIBHAR_06087) ylqF 1249513..1250457 (+) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  VIBHAR_RS23255 (VIBHAR_06088) cqsA 1250747..1252048 (+) 1302 WP_012129594.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VIBHAR_RS23260 (VIBHAR_06089) cqsS 1252155..1254200 (-) 2046 WP_012129595.1 response regulator Regulator
  VIBHAR_RS23265 (VIBHAR_06090) - 1254434..1255465 (+) 1032 WP_011999171.1 IS630 family transposase -
  VIBHAR_RS23270 (VIBHAR_06091) - 1255603..1256220 (+) 618 WP_012129596.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48847.85 Da        Isoelectric Point: 6.6137

>NTDB_id=29049 VIBHAR_RS23255 WP_012129594.1 1250747..1252048(+) (cqsA) [Vibrio campbellii ATCC BAA-1116]
MRSLQAHANLCNLTNDTELILVKLYNCQRWRFPVLRRELIMSDKPKTKPLPSFVEGRLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDDSKPAFETQLAEYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRNGSGVIVVDSVYSTIGTIAPLRDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTEQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFKRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=29049 VIBHAR_RS23255 WP_012129594.1 1250747..1252048(+) (cqsA) [Vibrio campbellii ATCC BAA-1116]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACACCGAACTCATATTAGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGGACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCG
TGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGAGTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCAGTCTATATCGATTTCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTAACGGCTCTGGCGTTA
TCGTTGTGGATTCGGTCTATAGCACGATAGGTACGATCGCCCCACTCCGCGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGCATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTGGAACT
CACTGAGCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGCGCCGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCATCTTTAGTTCGACGGTCCTTCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGCGAACCATGCTGTTCAAGCGCGCTAAAGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAAC
GAGTGCGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.923

90.069

0.513

Multiple sequence alignment