Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   VIBHAR_RS23260 Genome accession   NC_009784
Coordinates   1252155..1254200 (-) Length   681 a.a.
NCBI ID   WP_012129595.1    Uniprot ID   A7N6S2
Organism   Vibrio campbellii ATCC BAA-1116     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1254434..1255465 1252155..1254200 flank 234


Gene organization within MGE regions


Location: 1252155..1255465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS23260 (VIBHAR_06089) cqsS 1252155..1254200 (-) 2046 WP_012129595.1 response regulator Regulator
  VIBHAR_RS23265 (VIBHAR_06090) - 1254434..1255465 (+) 1032 WP_011999171.1 IS630 family transposase -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77798.58 Da        Isoelectric Point: 5.2971

>NTDB_id=29050 VIBHAR_RS23260 WP_012129595.1 1252155..1254200(-) (cqsS) [Vibrio campbellii ATCC BAA-1116]
MDAIRKVYQYAEPNLSLVGWMGFIGFPIYYIVWEFMFPQPYENLPLRILCSVLFFGIIYRNRTPFEWRGFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFVQTFVGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMK
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMRFELTVLDVPAVLKNKEYEFEFDLILIDME
SLDASGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=29050 VIBHAR_RS23260 WP_012129595.1 1252155..1254200(-) (cqsS) [Vibrio campbellii ATCC BAA-1116]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTAGCCTCGTAGGATGGATGGGCTTCATAGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCATACGAAAACCTACCGCTTCGTATTCTTTGCTCAGTCTTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTGGATTTTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTACCTTGCTTCTTCTTTTACATGTTGCTGATGAACAATTGGTCGAATGTTTGGGTGATGTCGTTTATGTCGGC
GATTTTTTTGCACATACTGCTCGTGCATATCACATCGGTGATGTTTGTTCAGACATTTGTGGGAATTGGTCTTGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTACTTCCGAAACCAGGTAGAACATGAAGCAAAAGTCTCAATCGCAAAGTCTTTTGGGGCGGG
TATCGCCCATGAAATGCGAAACCCACTCAGCGGTTTATTAACTTCTATCGATGTCATTCAATCCGTGTTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGATGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAG
ATCATTCATTCCGGAAACGAAACCATTGATTTGCTTCTTACTTCAATTGATGAGAACCGTGTTTCTCGCTCGACATTTAA
AAAACACTCTGCACAATCTGTCGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAACGATCGACAGACCGTTTTGCTATCT
CCTTGGATGTAAGAAGTGAGTTCGATTTCTTGGGCAGCGATACATTGCTTAAGTATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAAGACTTCCACATACACGTCACCATGTACAGTGATGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCGCCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ACTACGGCCTTGGACTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGCGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGAGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAATAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGACATGGAG
AGTTTAGACGCCAGTGGCAGCCATATAGATAAGGTTGAGTCGTTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATTCAAAGAGCGAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAACCGCTCGATTCAACA
AACAAGCGAACCATTATGGTGGTTGACGATAATGAGTCTTTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACTGAGGATGGGCTGCAGGCAATCAACGCATTGAATGAGAACAATGTTGACTTAATCCTAATGGACA
TCGAAATGCCGGTGATGGATGGTGTAGAAGCATCTCGTCAAATCAGAGGTTCAAATAAGGCCTACGCTTCGGTACCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTGGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7N6S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.175

100

0.485

Multiple sequence alignment