Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ELB75_RS02065 Genome accession   NZ_CP034670
Coordinates   412212..412676 (+) Length   154 a.a.
NCBI ID   WP_126984178.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407212..417676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS02035 (ELB75_02035) - 407366..407761 (-) 396 WP_126982523.1 energy transducer TonB -
  ELB75_RS02040 (ELB75_02040) orn 407947..408516 (-) 570 WP_126982524.1 oligoribonuclease -
  ELB75_RS02045 (ELB75_02045) - 408646..409284 (+) 639 WP_126982525.1 MBL fold metallo-hydrolase -
  ELB75_RS02050 (ELB75_02050) - 409606..410043 (+) 438 WP_126982526.1 MliC family protein -
  ELB75_RS02055 (ELB75_02055) tsaA 410430..411116 (+) 687 WP_126982527.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ELB75_RS02060 (ELB75_02060) pilE 411686..412126 (+) 441 WP_126984177.1 pilin Machinery gene
  ELB75_RS02065 (ELB75_02065) pilE 412212..412676 (+) 465 WP_126984178.1 pilin Machinery gene
  ELB75_RS02070 (ELB75_02070) - 412616..414451 (+) 1836 WP_126982528.1 O-antigen ligase family protein -
  ELB75_RS02075 (ELB75_02075) - 414469..415233 (+) 765 WP_241236098.1 fimb protein -
  ELB75_RS02085 (ELB75_02085) tehB 415916..416779 (+) 864 WP_126984180.1 tellurite resistance methyltransferase TehB -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16523.04 Da        Isoelectric Point: 7.2623

>NTDB_id=290472 ELB75_RS02065 WP_126984178.1 412212..412676(+) (pilE) [Eikenella corrodens strain KCOM 3110]
MRKDKERGFTLIELMIVIAIVGILSAIALPTYQTYIAKSQVAEGMSLLDGLKSSVTDNYFASSVCPDNLSNSYFGIAQKD
QIVGSHIASVHTRAATQPGYVCEMEATFKPAPDSAAPLQGNSLLLSMKVTSGAVLWHCSSANLPGKYLPDVCRH

Nucleotide


Download         Length: 465 bp        

>NTDB_id=290472 ELB75_RS02065 WP_126984178.1 412212..412676(+) (pilE) [Eikenella corrodens strain KCOM 3110]
ATGAGGAAAGATAAGGAACGGGGATTTACCCTGATCGAGCTGATGATTGTGATTGCCATTGTCGGCATTTTGTCGGCTAT
TGCCCTACCCACGTATCAAACTTATATAGCCAAATCGCAAGTGGCCGAGGGAATGTCGTTATTGGACGGGCTGAAAAGTT
CTGTAACAGACAATTATTTTGCCAGCAGCGTCTGCCCGGATAACCTGAGCAACAGCTATTTTGGCATTGCGCAGAAAGAC
CAGATTGTCGGCAGCCATATTGCATCCGTACATACCCGGGCAGCGACCCAGCCGGGCTATGTTTGTGAAATGGAAGCAAC
ATTCAAACCTGCGCCGGACAGTGCCGCTCCGCTGCAGGGAAACTCTTTGCTGCTCAGCATGAAAGTAACCAGCGGAGCGG
TTCTTTGGCATTGCTCCTCGGCAAACCTTCCCGGCAAGTATCTGCCGGATGTATGCCGACACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)

Pilin (bacterial filament) (Pilin)

(37-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

36.585

100

0.39
  pilA Ralstonia pseudosolanacearum GMI1000

32.955

100

0.377