Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VIBHAR_RS16180 Genome accession   NC_009783
Coordinates   3512168..3512785 (+) Length   205 a.a.
NCBI ID   WP_005428669.1    Uniprot ID   A0AAQ2XXV5
Organism   Vibrio campbellii ATCC BAA-1116     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3507168..3517785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS16160 (VIBHAR_03455) - 3507450..3508367 (-) 918 WP_041853462.1 ABC transporter ATP-binding protein -
  VIBHAR_RS16165 (VIBHAR_03456) - 3508607..3510277 (-) 1671 WP_041853279.1 SulP family inorganic anion transporter -
  VIBHAR_RS16170 (VIBHAR_03457) can 3510561..3511229 (+) 669 WP_012128868.1 carbonate dehydratase -
  VIBHAR_RS16175 (VIBHAR_03458) hpt 3511316..3511846 (-) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  VIBHAR_RS16180 (VIBHAR_03459) opaR 3512168..3512785 (+) 618 WP_005428669.1 transcriptional regulator OpaR Regulator
  VIBHAR_RS16190 (VIBHAR_03462) lpdA 3513181..3514611 (-) 1431 WP_012128871.1 dihydrolipoyl dehydrogenase -
  VIBHAR_RS16195 (VIBHAR_03463) aceF 3514855..3516762 (-) 1908 WP_012128872.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=29034 VIBHAR_RS16180 WP_005428669.1 3512168..3512785(+) (opaR) [Vibrio campbellii ATCC BAA-1116]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=29034 VIBHAR_RS16180 WP_005428669.1 3512168..3512785(+) (opaR) [Vibrio campbellii ATCC BAA-1116]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTATTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCCATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTATTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGCGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment