Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CSC47_RS11935 Genome accession   NZ_CP029087
Coordinates   2259663..2260058 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR461     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2254663..2265058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC47_RS11910 (CSC47_2065) thiE 2255262..2255903 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  CSC47_RS11915 (CSC47_2066) thiM 2255905..2256696 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  CSC47_RS11920 (CSC47_2067) thiD 2256680..2257510 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CSC47_RS11925 (CSC47_2068) tenA 2257503..2258192 (-) 690 WP_000396077.1 thiaminase II -
  CSC47_RS11930 (CSC47_2069) sceD 2258579..2259274 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  CSC47_RS11935 (CSC47_2070) ssb 2259663..2260058 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  CSC47_RS11940 (CSC47_2071) - 2260252..2260692 (+) 441 WP_000846746.1 YwpF-like family protein -
  CSC47_RS11945 (CSC47_2072) fabZ 2260751..2261191 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CSC47_RS11950 (CSC47_2073) murA 2261225..2262490 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CSC47_RS11955 (CSC47_2074) - 2262601..2262834 (-) 234 WP_000384523.1 DUF1146 family protein -
  CSC47_RS11960 - 2262966..2263058 (-) 93 WP_001790611.1 hypothetical protein -
  CSC47_RS11965 (CSC47_2075) - 2263396..2263800 (-) 405 WP_108711074.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=290323 CSC47_RS11935 WP_000932694.1 2259663..2260058(-) (ssb) [Staphylococcus aureus strain AR461]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=290323 CSC47_RS11935 WP_000932694.1 2259663..2260058(-) (ssb) [Staphylococcus aureus strain AR461]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment