Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   EJ992_RS17960 Genome accession   NZ_CP034569
Coordinates   3442842..3443060 (-) Length   72 a.a.
NCBI ID   WP_011198294.1    Uniprot ID   Q65EU9
Organism   Bacillus licheniformis strain ATCC 14580     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3437842..3448060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ992_RS17920 (EJ992_17920) - 3438066..3438464 (+) 399 WP_003185294.1 YrvL family regulatory protein -
  EJ992_RS17925 (EJ992_17925) - 3438561..3439046 (+) 486 WP_003185296.1 DUF6022 family protein -
  EJ992_RS22170 - 3439199..3439426 (+) 228 WP_003185298.1 hypothetical protein -
  EJ992_RS17935 (EJ992_17935) - 3439828..3440112 (+) 285 WP_003185302.1 hypothetical protein -
  EJ992_RS17940 (EJ992_17940) - 3440142..3440423 (-) 282 Protein_3493 peptidoglycan-binding domain-containing protein -
  EJ992_RS22110 - 3440847..3440999 (+) 153 WP_011198291.1 hypothetical protein -
  EJ992_RS17950 (EJ992_17950) - 3441163..3441522 (+) 360 WP_011198293.1 DUF4064 domain-containing protein -
  EJ992_RS17960 (EJ992_17960) dinR/lexA 3442842..3443060 (-) 219 WP_011198294.1 transcriptional regulator Regulator
  EJ992_RS17965 (EJ992_17965) - 3443287..3443856 (+) 570 WP_011198295.1 hypothetical protein -
  EJ992_RS17970 (EJ992_17970) - 3444101..3444193 (-) 93 Protein_3499 peptidoglycan-binding domain-containing protein -
  EJ992_RS17980 (EJ992_17975) - 3444373..3444603 (-) 231 WP_011198296.1 helix-turn-helix domain-containing protein -
  EJ992_RS22115 - 3444858..3445001 (-) 144 WP_021837703.1 hypothetical protein -
  EJ992_RS17985 (EJ992_17980) - 3445108..3446130 (-) 1023 WP_011198298.1 hypothetical protein -
  EJ992_RS17990 (EJ992_17985) - 3446401..3447930 (+) 1530 WP_011198299.1 T7SS effector LXG polymorphic toxin -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8231.55 Da        Isoelectric Point: 10.2439

>NTDB_id=290198 EJ992_RS17960 WP_011198294.1 3442842..3443060(-) (dinR/lexA) [Bacillus licheniformis strain ATCC 14580]
MKKSEQILEAIDELTKEKGFPPSVREIGERVGLKSSSTTKGHLDRLRKKGLVDWEEGKPRTLHILYKEKATI

Nucleotide


Download         Length: 219 bp        

>NTDB_id=290198 EJ992_RS17960 WP_011198294.1 3442842..3443060(-) (dinR/lexA) [Bacillus licheniformis strain ATCC 14580]
ATGAAAAAATCCGAACAAATATTAGAAGCCATAGACGAACTAACTAAAGAAAAAGGTTTCCCGCCATCTGTTAGGGAAAT
AGGTGAAAGGGTTGGTTTAAAATCTTCAAGTACAACAAAAGGTCATCTTGACCGGTTGCGTAAAAAGGGGCTTGTTGATT
GGGAAGAAGGTAAGCCGAGAACATTGCATATTTTGTATAAAGAAAAAGCCACCATTTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(5-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65EU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

55.224

93.056

0.514

Multiple sequence alignment