Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CSC49_RS00405 Genome accession   NZ_CP029084
Coordinates   52947..53342 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR464     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 47947..58342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC49_RS00380 (CSC49_0045) thiE 48545..49186 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  CSC49_RS00385 (CSC49_0046) thiM 49188..49979 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  CSC49_RS00390 (CSC49_0047) thiD 49963..50793 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CSC49_RS00395 (CSC49_0048) tenA 50786..51475 (-) 690 WP_064135595.1 thiaminase II -
  CSC49_RS00400 (CSC49_0050) sceD 51863..52558 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  CSC49_RS00405 (CSC49_0051) ssb 52947..53342 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  CSC49_RS00410 (CSC49_0052) - 53536..53976 (+) 441 WP_000846751.1 YwpF-like family protein -
  CSC49_RS00415 (CSC49_0053) fabZ 54032..54472 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CSC49_RS00420 (CSC49_0054) murA 54506..55771 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CSC49_RS00425 (CSC49_0055) - 55882..56115 (-) 234 WP_000384523.1 DUF1146 family protein -
  CSC49_RS00435 (CSC49_0056) - 56712..57116 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=290198 CSC49_RS00405 WP_000932694.1 52947..53342(-) (ssb) [Staphylococcus aureus strain AR464]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=290198 CSC49_RS00405 WP_000932694.1 52947..53342(-) (ssb) [Staphylococcus aureus strain AR464]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment