Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CSC51_RS08825 Genome accession   NZ_CP029080
Coordinates   1718361..1719233 (+) Length   290 a.a.
NCBI ID   WP_162561474.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR466     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1713361..1724233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC51_RS08805 (CSC51_1610) sucC 1713474..1714640 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  CSC51_RS08810 (CSC51_1611) sucD 1714662..1715570 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  CSC51_RS08815 (CSC51_1612) - 1715799..1716917 (+) 1119 WP_001041653.1 LysM peptidoglycan-binding domain-containing protein -
  CSC51_RS08820 (CSC51_1613) fmhC 1716945..1718189 (+) 1245 WP_000672866.1 FemA/FemB family glycyltransferase FmhC -
  CSC51_RS08825 (CSC51_1614) dprA 1718361..1719233 (+) 873 WP_162561474.1 DNA-processing protein DprA Machinery gene
  CSC51_RS08830 (CSC51_1615) topA 1719407..1721482 (+) 2076 WP_001622395.1 type I DNA topoisomerase -
  CSC51_RS08835 (CSC51_1616) trmFO 1721638..1722945 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33550.02 Da        Isoelectric Point: 9.6905

>NTDB_id=290126 CSC51_RS08825 WP_162561474.1 1718361..1719233(+) (dprA) [Staphylococcus aureus strain AR466]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLNHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFLLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=290126 CSC51_RS08825 WP_162561474.1 1718361..1719233(+) (dprA) [Staphylococcus aureus strain AR466]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTAATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCTATTACTTCTTTTCTATAAAGGAAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACGCATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979

Multiple sequence alignment