Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   DDT10_RS17845 Genome accession   NZ_CP029071
Coordinates   3635736..3635855 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3630736..3640855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS17825 (DDT10_17825) narK 3630895..3632085 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  DDT10_RS17830 (DDT10_17830) argS 3632220..3633890 (-) 1671 WP_053573959.1 arginine--tRNA ligase -
  DDT10_RS17835 (DDT10_17835) - 3633887..3634315 (-) 429 WP_014419128.1 DUF1934 family protein -
  DDT10_RS17840 (DDT10_17840) rapF 3634607..3635752 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  DDT10_RS17845 (DDT10_17845) phrF 3635736..3635855 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  DDT10_RS17850 (DDT10_17850) - 3636053..3636256 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  DDT10_RS17855 (DDT10_17855) - 3636270..3636473 (+) 204 WP_007407641.1 hypothetical protein -
  DDT10_RS17860 (DDT10_17860) - 3636508..3636693 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  DDT10_RS17865 (DDT10_17865) - 3636881..3637162 (+) 282 WP_007407643.1 hypothetical protein -
  DDT10_RS17870 (DDT10_17870) - 3637206..3637718 (+) 513 WP_053573958.1 stage II sporulation protein M -
  DDT10_RS17880 (DDT10_17880) - 3638309..3638527 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  DDT10_RS17885 (DDT10_17885) speB 3638695..3639567 (-) 873 WP_007407646.1 agmatinase -
  DDT10_RS17890 (DDT10_17890) speE 3639626..3640456 (-) 831 WP_053573957.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=290072 DDT10_RS17845 WP_015240778.1 3635736..3635855(+) (phrF) [Bacillus amyloliquefaciens strain ALB79]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=290072 DDT10_RS17845 WP_015240778.1 3635736..3635855(+) (phrF) [Bacillus amyloliquefaciens strain ALB79]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment