Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   DDT10_RS05705 Genome accession   NZ_CP029071
Coordinates   1120185..1120376 (+) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus amyloliquefaciens strain ALB79     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1115185..1125376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT10_RS05670 (DDT10_05670) argF 1116037..1117008 (+) 972 WP_039252015.1 ornithine carbamoyltransferase -
  DDT10_RS05675 (DDT10_05675) - 1117084..1117263 (+) 180 WP_003155070.1 YjzC family protein -
  DDT10_RS05680 (DDT10_05680) - 1117300..1117485 (-) 186 WP_003155069.1 YjzD family protein -
  DDT10_RS05690 (DDT10_05690) - 1117746..1118480 (+) 735 WP_015417203.1 hypothetical protein -
  DDT10_RS05695 (DDT10_05695) - 1118563..1119129 (+) 567 WP_015417204.1 NAD(P) binding enzyme -
  DDT10_RS05700 (DDT10_05700) med 1119219..1120172 (+) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  DDT10_RS05705 (DDT10_05705) comZ 1120185..1120376 (+) 192 WP_003155061.1 ComZ family protein Regulator
  DDT10_RS05710 (DDT10_05710) - 1120405..1120623 (-) 219 WP_007409123.1 hypothetical protein -
  DDT10_RS05715 (DDT10_05715) - 1120791..1121729 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  DDT10_RS05720 (DDT10_05720) fabF 1121752..1122990 (+) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  DDT10_RS05725 (DDT10_05725) - 1123072..1123857 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  DDT10_RS05730 (DDT10_05730) - 1124031..1125017 (+) 987 WP_033574515.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=290021 DDT10_RS05705 WP_003155061.1 1120185..1120376(+) (comZ) [Bacillus amyloliquefaciens strain ALB79]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=290021 DDT10_RS05705 WP_003155061.1 1120185..1120376(+) (comZ) [Bacillus amyloliquefaciens strain ALB79]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794

Multiple sequence alignment