Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   DDT09_RS18190 Genome accession   NZ_CP029070
Coordinates   3672848..3672967 (+) Length   39 a.a.
NCBI ID   WP_041482476.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3667848..3677967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS18170 (DDT09_18170) narK 3668007..3669197 (-) 1191 WP_061861632.1 nitrate transporter NarK -
  DDT09_RS18175 (DDT09_18175) argS 3669332..3671002 (-) 1671 WP_014419127.1 arginine--tRNA ligase -
  DDT09_RS18180 (DDT09_18180) - 3670999..3671427 (-) 429 WP_014419128.1 DUF1934 family protein -
  DDT09_RS18185 (DDT09_18185) rapF 3671719..3672864 (+) 1146 WP_014419129.1 tetratricopeptide repeat protein Regulator
  DDT09_RS18190 (DDT09_18190) phrF 3672848..3672967 (+) 120 WP_041482476.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  DDT09_RS18195 (DDT09_18195) - 3673165..3673368 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  DDT09_RS18200 (DDT09_18200) - 3673382..3673585 (+) 204 WP_007407641.1 hypothetical protein -
  DDT09_RS18205 (DDT09_18205) - 3673620..3673805 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  DDT09_RS18210 (DDT09_18210) - 3673992..3674273 (+) 282 WP_007407643.1 hypothetical protein -
  DDT09_RS18215 (DDT09_18215) - 3674317..3674829 (+) 513 WP_007614439.1 stage II sporulation protein M -
  DDT09_RS18225 (DDT09_18225) - 3675420..3675638 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  DDT09_RS18230 (DDT09_18230) speB 3675791..3676663 (-) 873 WP_061861633.1 agmatinase -
  DDT09_RS18235 (DDT09_18235) speE 3676722..3677552 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4267.13 Da        Isoelectric Point: 10.0233

>NTDB_id=289995 DDT09_RS18190 WP_041482476.1 3672848..3672967(+) (phrF) [Bacillus amyloliquefaciens strain ALB69]
MKLKYKLALTCLAVSTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=289995 DDT09_RS18190 WP_041482476.1 3672848..3672967(+) (phrF) [Bacillus amyloliquefaciens strain ALB69]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment