Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAALB65_RS15390 Genome accession   NZ_CP029069
Coordinates   3082793..3083437 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3077793..3088437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS15355 (BAALB65_15355) - 3078978..3079409 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  BAALB65_RS15360 (BAALB65_15360) - 3079409..3079750 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BAALB65_RS15365 (BAALB65_15365) - 3079743..3081224 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  BAALB65_RS15370 (BAALB65_15370) - 3081230..3081706 (+) 477 WP_022553708.1 Na+/H+ antiporter subunit E -
  BAALB65_RS15375 (BAALB65_15375) - 3081706..3081990 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BAALB65_RS15380 (BAALB65_15380) mnhG 3081974..3082348 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BAALB65_RS15385 (BAALB65_15385) - 3082388..3082771 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  BAALB65_RS15390 (BAALB65_15390) comA 3082793..3083437 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BAALB65_RS15395 (BAALB65_15395) comP 3083518..3085821 (-) 2304 WP_021495364.1 histidine kinase Regulator
  BAALB65_RS20500 (BAALB65_15400) comX 3085841..3086020 (-) 180 WP_306383677.1 competence pheromone ComX -
  BAALB65_RS15405 (BAALB65_15405) comQ 3085947..3086960 (-) 1014 WP_275425628.1 class 1 isoprenoid biosynthesis enzyme Regulator
  BAALB65_RS15410 (BAALB65_15410) degQ 3087091..3087231 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BAALB65_RS15420 (BAALB65_15420) - 3087697..3088038 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=289904 BAALB65_RS15390 WP_003152052.1 3082793..3083437(-) (comA) [Bacillus amyloliquefaciens strain ALB65]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=289904 BAALB65_RS15390 WP_003152052.1 3082793..3083437(-) (comA) [Bacillus amyloliquefaciens strain ALB65]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment