Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   EJF26_RS09700 Genome accession   NZ_CP034442
Coordinates   1918387..1920234 (+) Length   615 a.a.
NCBI ID   WP_001061165.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1913387..1925234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS09680 - 1914109..1914888 (+) 780 WP_000290041.1 alpha/beta hydrolase family protein -
  EJF26_RS09685 - 1915004..1916227 (+) 1224 WP_000286590.1 aminoacyltransferase -
  EJF26_RS09690 - 1916232..1917464 (+) 1233 WP_000176938.1 aminoacyltransferase -
  EJF26_RS09695 - 1917584..1918285 (+) 702 WP_000498550.1 M57 family metalloprotease -
  EJF26_RS09700 uvrC 1918387..1920234 (+) 1848 WP_001061165.1 excinuclease ABC subunit UvrC Machinery gene
  EJF26_RS09705 - 1920224..1921063 (+) 840 WP_001060287.1 metallophosphoesterase -
  EJF26_RS09710 - 1921220..1921744 (+) 525 WP_000720918.1 hypothetical protein -
  EJF26_RS09715 - 1921930..1922535 (+) 606 WP_000670187.1 nitroreductase family protein -
  EJF26_RS09720 pepV 1922548..1923948 (+) 1401 WP_000125052.1 dipeptidase PepV -
  EJF26_RS09725 - 1924002..1924586 (+) 585 WP_000078162.1 uracil-DNA glycosylase family protein -
  EJF26_RS09730 - 1924599..1925090 (+) 492 WP_000340326.1 prolyl-tRNA synthetase associated domain-containing protein -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 70715.20 Da        Isoelectric Point: 8.7058

>NTDB_id=289832 EJF26_RS09700 WP_001061165.1 1918387..1920234(+) (uvrC) [Streptococcus oralis subsp. dentisani strain F0392]
MNNLIKSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDTKTEALVSEIVDFEFIVTESNIEALLLEIN
LIKENKPKYNIMLKDDKSYPFIKITNERYPRLIITRQVKKDGGLYFGPYPDVGAANEIKRLLDRIFPFRKCTNPPSKVCF
YYHIGQCVAHTICKKDEAYFKSMAQEVSDFLKGQDDKIIDDLKGKMTKAAQSMEFERAAEYRDLIQAIGTLRTKQRVMSK
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNLFPYYNDPDEDFLTYVGQFYQEKSHLVPNEVLIPQDIDEEAVKVL
VDTKILKPQRGEKKQLVNLAIKNARVSLEQKFNLLEKSVEKTQGAIENLGRLLQIPTPVRIESFDNSNIMGTSPVSAMVV
FVNGKPSKKDYRKYKIKTVIGPDDYASMREVIRRRYGRVQRDGLTPPDLIVIDGGQGQVNIAKQVIQEELGLDIPIAGLQ
KNDKHQTHELLFGDPLEVVELSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSL
TKIKEASVDEIVEVGVPRAVAEAVQTKLNPQEEVELAQVAEEQVYYQTEGDHYEQ

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=289832 EJF26_RS09700 WP_001061165.1 1918387..1920234(+) (uvrC) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAATAACTTAATCAAATCAAAACTGGAGCTCTTGCCGACCAGCCCTGGTTGTTACATTCACAAGGATAAAAATGGCAC
CATTATCTATGTAGGAAAGGCTAAAAATCTGCGCAATCGTGTGCGGTCTTATTTTCGCGGGAGTCATGATACCAAGACGG
AGGCTCTGGTGTCTGAGATTGTAGATTTTGAATTTATCGTCACTGAGTCTAATATTGAGGCTCTTCTCCTAGAAATCAAC
CTGATCAAGGAAAATAAGCCCAAGTACAATATCATGCTCAAGGATGATAAGTCTTATCCTTTCATCAAAATCACCAATGA
ACGCTATCCTCGCTTGATTATCACCCGTCAGGTCAAAAAGGACGGTGGTCTCTACTTTGGTCCCTATCCAGATGTGGGGG
CAGCCAATGAAATCAAGCGGCTTTTAGATCGGATTTTTCCTTTTCGCAAGTGTACTAATCCACCGTCTAAGGTCTGTTTT
TACTACCATATCGGCCAGTGTGTGGCCCATACCATCTGTAAAAAAGATGAGGCTTATTTCAAGTCCATGGCCCAGGAGGT
TTCTGATTTCCTAAAAGGGCAGGATGACAAAATCATTGATGACCTCAAGGGTAAGATGACAAAGGCAGCTCAGAGTATGG
AGTTTGAACGTGCGGCGGAATACCGTGACCTGATTCAGGCTATTGGAACGCTTCGGACCAAGCAACGAGTTATGTCTAAA
GACCTCCAAAACCGTGATGTCTTTGGCTACTATGTGGACAAGGGCTGGATGTGTGTCCAGGTTTTCTTTGTCCGTCAGGG
CAAGCTCATTGAGCGGGACGTCAATCTCTTCCCCTACTACAATGATCCGGATGAGGACTTCTTGACCTATGTGGGACAAT
TCTATCAAGAAAAATCTCACCTGGTTCCCAATGAAGTATTGATTCCGCAGGATATCGATGAAGAAGCAGTCAAGGTCTTG
GTGGATACCAAGATTCTCAAACCTCAGCGTGGTGAGAAAAAACAGCTGGTCAATCTAGCTATAAAGAATGCCCGTGTTAG
TCTGGAGCAGAAGTTCAATCTGCTAGAAAAATCTGTCGAAAAGACCCAAGGGGCTATTGAAAATCTAGGACGCTTGCTCC
AAATCCCAACCCCAGTCCGCATCGAGTCCTTTGATAACTCTAATATCATGGGAACCAGCCCTGTTTCAGCTATGGTGGTC
TTTGTTAATGGCAAACCGAGTAAAAAAGACTACCGTAAATACAAAATCAAGACTGTCATTGGGCCTGATGATTATGCGAG
TATGCGAGAGGTCATTCGCAGACGCTATGGCCGAGTTCAACGTGATGGTTTAACCCCTCCAGATTTGATTGTCATTGATG
GGGGACAAGGTCAAGTCAATATTGCCAAGCAGGTCATTCAAGAAGAGCTAGGTTTGGATATTCCTATTGCAGGTCTGCAA
AAGAATGACAAGCACCAAACCCACGAGCTGCTCTTTGGAGATCCGCTGGAAGTAGTGGAGTTATCTCGCAATTCTCAGGA
ATTTTTCCTCCTCCAACGCATCCAGGATGAGGTGCACCGCTTTGCTATCACTTTCCACCGCCAACTGCGCTCCAAAAATT
CCTTTTCATCACAACTGGATGGGATTGAAGGATTGGGGCCTAAACGTAAGCAGAATCTTATGAAACATTTCAAGTCTCTA
ACTAAAATCAAGGAAGCCAGTGTGGATGAGATTGTCGAAGTTGGGGTGCCAAGAGCAGTCGCAGAAGCTGTGCAAACCAA
GTTGAACCCGCAGGAAGAAGTGGAGTTGGCTCAAGTGGCGGAAGAACAAGTATATTACCAAACGGAAGGAGACCATTATG
AACAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(196-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

96.254

99.837

0.961
  uvrC Streptococcus pneumoniae R6

95.928

99.837

0.958
  uvrC Streptococcus pneumoniae D39

95.928

99.837

0.958