Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PAKB6_RS28260 Genome accession   NZ_CP034429
Coordinates   5987413..5988087 (-) Length   224 a.a.
NCBI ID   WP_003114357.1    Uniprot ID   Q9HTN5
Organism   Pseudomonas aeruginosa strain GIMC5015:PAKB6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5982413..5993087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAKB6_RS28230 (PAKB6_5562) - 5982587..5983921 (+) 1335 WP_010895702.1 aspartate aminotransferase family protein -
  PAKB6_RS28235 (PAKB6_5563) - 5983986..5984348 (+) 363 WP_003096551.1 cupin domain-containing protein -
  PAKB6_RS28240 (PAKB6_5564) rpmG 5984483..5984638 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  PAKB6_RS28245 (PAKB6_5565) rpmB 5984650..5984886 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  PAKB6_RS28250 (PAKB6_5566) - 5985242..5986822 (+) 1581 WP_003098288.1 ABC transporter substrate-binding protein -
  PAKB6_RS28255 (PAKB6_5567) - 5986848..5987396 (+) 549 WP_003098290.1 hypothetical protein -
  PAKB6_RS28260 (PAKB6_5568) radC 5987413..5988087 (-) 675 WP_003114357.1 DNA repair protein RadC Machinery gene
  PAKB6_RS28265 (PAKB6_5569) coaBC 5988227..5989435 (+) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  PAKB6_RS28270 (PAKB6_5570) dut 5989443..5989898 (+) 456 WP_003098293.1 dUTP diphosphatase -
  PAKB6_RS28275 (PAKB6_5571) - 5989935..5992541 (+) 2607 WP_003114359.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24934.68 Da        Isoelectric Point: 7.2089

>NTDB_id=289620 PAKB6_RS28260 WP_003114357.1 5987413..5988087(-) (radC) [Pseudomonas aeruginosa strain GIMC5015:PAKB6]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLSFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=289620 PAKB6_RS28260 WP_003114357.1 5987413..5988087(-) (radC) [Pseudomonas aeruginosa strain GIMC5015:PAKB6]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGTCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HTN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397