Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DDE72_RS04520 Genome accession   NZ_CP029034
Coordinates   850637..851251 (+) Length   204 a.a.
NCBI ID   WP_032873955.1    Uniprot ID   -
Organism   Bacillus velezensis strain LDO2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 845637..856251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS04485 (DDE72_04485) aroE 846323..847165 (+) 843 WP_032873946.1 shikimate dehydrogenase -
  DDE72_RS04490 (DDE72_04490) yhbY 847159..847449 (+) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -
  DDE72_RS04495 (DDE72_04495) - 847460..848029 (+) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  DDE72_RS04500 (DDE72_04500) yqeK 848019..848594 (+) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DDE72_RS04505 (DDE72_04505) rsfS 848598..848954 (+) 357 WP_007408260.1 ribosome silencing factor -
  DDE72_RS04510 (DDE72_04510) - 848951..849688 (+) 738 WP_032873951.1 class I SAM-dependent methyltransferase -
  DDE72_RS04515 (DDE72_04515) comER 849757..850578 (-) 822 WP_012118027.1 late competence protein ComER -
  DDE72_RS04520 (DDE72_04520) comEA 850637..851251 (+) 615 WP_032873955.1 helix-hairpin-helix domain-containing protein Machinery gene
  DDE72_RS04525 (DDE72_04525) - 851318..851887 (+) 570 WP_003152868.1 ComE operon protein 2 -
  DDE72_RS04530 (DDE72_04530) comEC 851888..854239 (+) 2352 WP_032873958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DDE72_RS04535 (DDE72_04535) - 854258..854392 (-) 135 WP_003152870.1 YqzM family protein -
  DDE72_RS19715 - 854433..854584 (+) 152 Protein_869 hypothetical protein -
  DDE72_RS04540 (DDE72_04540) holA 854624..855665 (+) 1042 Protein_870 DNA polymerase III subunit delta -
  DDE72_RS04545 (DDE72_04545) rpsT 855682..855948 (-) 267 WP_003152876.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22265.47 Da        Isoelectric Point: 6.4940

>NTDB_id=289488 DDE72_RS04520 WP_032873955.1 850637..851251(+) (comEA) [Bacillus velezensis strain LDO2]
MTKAMMTERLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDLKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=289488 DDE72_RS04520 WP_032873955.1 850637..851251(+) (comEA) [Bacillus velezensis strain LDO2]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATTTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAACGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA Latilactobacillus sakei subsp. sakei 23K

31.897

100

0.363

Multiple sequence alignment