Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EJH97_RS06205 Genome accession   NZ_CP034389
Coordinates   1261851..1262588 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RS571     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1256851..1267588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJH97_RS06180 (EJH97_06180) tyrA 1257225..1258346 (+) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EJH97_RS06185 (EJH97_06185) pheA 1258389..1259549 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  EJH97_RS06190 (EJH97_06190) pheL 1259648..1259695 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EJH97_RS06195 (EJH97_06195) raiA 1259799..1260140 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EJH97_RS06200 (EJH97_06200) - 1260401..1261747 (-) 1347 WP_024181829.1 IS4-like element IS4 family transposase -
  EJH97_RS06205 (EJH97_06205) comL 1261851..1262588 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EJH97_RS06210 (EJH97_06210) rluD 1262723..1263703 (+) 981 WP_022645998.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EJH97_RS06215 (EJH97_06215) yfiH 1263700..1264431 (+) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  EJH97_RS06220 (EJH97_06220) clpC 1264561..1267134 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=289344 EJH97_RS06205 WP_000197686.1 1261851..1262588(-) (comL) [Escherichia coli strain RS571]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=289344 EJH97_RS06205 WP_000197686.1 1261851..1262588(-) (comL) [Escherichia coli strain RS571]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACGTCTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376