Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EJH97_RS04130 Genome accession   NZ_CP034389
Coordinates   859659..860135 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain RS571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 854659..865135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJH97_RS04095 (EJH97_04095) kpsS 856259..857479 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  EJH97_RS04100 (EJH97_04100) - 857505..857735 (-) 231 Protein_804 hypothetical protein -
  EJH97_RS04105 (EJH97_04105) - 857841..858017 (-) 177 WP_057950854.1 DUF957 domain-containing protein -
  EJH97_RS04110 (EJH97_04110) - 858034..858401 (-) 368 Protein_806 DUF5983 family protein -
  EJH97_RS04115 (EJH97_04115) cbtA 858461..858838 (-) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EJH97_RS04120 (EJH97_04120) cbeA 858927..859295 (-) 369 Protein_808 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EJH97_RS04125 (EJH97_04125) - 859369..859590 (-) 222 WP_000692300.1 DUF987 domain-containing protein -
  EJH97_RS04130 (EJH97_04130) radC 859659..860135 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  EJH97_RS04135 (EJH97_04135) - 860151..860636 (-) 486 WP_000849556.1 antirestriction protein -
  EJH97_RS04140 (EJH97_04140) - 860691..861509 (-) 819 WP_057950853.1 DUF932 domain-containing protein -
  EJH97_RS04150 (EJH97_04150) - 861627..861822 (-) 196 Protein_813 DUF905 family protein -
  EJH97_RS04155 (EJH97_04155) - 861893..864739 (-) 2847 WP_104074254.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=289337 EJH97_RS04130 WP_001186726.1 859659..860135(-) (radC) [Escherichia coli strain RS571]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=289337 EJH97_RS04130 WP_001186726.1 859659..860135(-) (radC) [Escherichia coli strain RS571]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment